Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11287193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11547197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17717718136get_template_part( ).../page.php:28
60.17717718712locate_template( ).../general-template.php:206
70.17727718840load_template( ).../template.php:720
80.17727719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17797736328the_content( ).../content-page.php:22
100.17817736576apply_filters( ).../post-template.php:256
110.17817736976WP_Hook->apply_filters( ).../plugin.php:205
120.17907742504do_shortcode( ).../class-wp-hook.php:310
130.17917748560preg_replace_callback ( ).../shortcodes.php:273
140.17917749184do_shortcode_tag( ).../shortcodes.php:273
150.17917749184bicluster_info_shortcode( ).../shortcodes.php:433
160.17927749384file_get_contents ( ).../short_codes.php:666

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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11287193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11547197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17717718136get_template_part( ).../page.php:28
60.17717718712locate_template( ).../general-template.php:206
70.17727718840load_template( ).../template.php:720
80.17727719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17797736328the_content( ).../content-page.php:22
100.17817736576apply_filters( ).../post-template.php:256
110.17817736976WP_Hook->apply_filters( ).../plugin.php:205
120.17907742504do_shortcode( ).../class-wp-hook.php:310
130.17917748560preg_replace_callback ( ).../shortcodes.php:273
140.17917749184do_shortcode_tag( ).../shortcodes.php:273
150.17917749184bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11287193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11547197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17717718136get_template_part( ).../page.php:28
60.17717718712locate_template( ).../general-template.php:206
70.17727718840load_template( ).../template.php:720
80.17727719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17797736328the_content( ).../content-page.php:22
100.17817736576apply_filters( ).../post-template.php:256
110.17817736976WP_Hook->apply_filters( ).../plugin.php:205
120.17907742504do_shortcode( ).../class-wp-hook.php:310
130.17917748560preg_replace_callback ( ).../shortcodes.php:273
140.17917749184do_shortcode_tag( ).../shortcodes.php:273
150.17917749184bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11287193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11547197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17717718136get_template_part( ).../page.php:28
60.17717718712locate_template( ).../general-template.php:206
70.17727718840load_template( ).../template.php:720
80.17727719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17797736328the_content( ).../content-page.php:22
100.17817736576apply_filters( ).../post-template.php:256
110.17817736976WP_Hook->apply_filters( ).../plugin.php:205
120.17907742504do_shortcode( ).../class-wp-hook.php:310
130.17917748560preg_replace_callback ( ).../shortcodes.php:273
140.17917749184do_shortcode_tag( ).../shortcodes.php:273
150.17917749184bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11287193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11547197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17717718136get_template_part( ).../page.php:28
60.17717718712locate_template( ).../general-template.php:206
70.17727718840load_template( ).../template.php:720
80.17727719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17797736328the_content( ).../content-page.php:22
100.17817736576apply_filters( ).../post-template.php:256
110.17817736976WP_Hook->apply_filters( ).../plugin.php:205
120.17907742504do_shortcode( ).../class-wp-hook.php:310
130.17917748560preg_replace_callback ( ).../shortcodes.php:273
140.17917749184do_shortcode_tag( ).../shortcodes.php:273
150.17917749184bicluster_info_shortcode( ).../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11287193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11547197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17717718136get_template_part( ).../page.php:28
60.17717718712locate_template( ).../general-template.php:206
70.17727718840load_template( ).../template.php:720
80.17727719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17797736328the_content( ).../content-page.php:22
100.17817736576apply_filters( ).../post-template.php:256
110.17817736976WP_Hook->apply_filters( ).../plugin.php:205
120.17907742504do_shortcode( ).../class-wp-hook.php:310
130.17917748560preg_replace_callback ( ).../shortcodes.php:273
140.17917749184do_shortcode_tag( ).../shortcodes.php:273
150.17917749184bicluster_info_shortcode( ).../shortcodes.php:433

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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11287193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11547197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17717718136get_template_part( ).../page.php:28
60.17717718712locate_template( ).../general-template.php:206
70.17727718840load_template( ).../template.php:720
80.17727719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17797736328the_content( ).../content-page.php:22
100.17817736576apply_filters( ).../post-template.php:256
110.17817736976WP_Hook->apply_filters( ).../plugin.php:205
120.17907742504do_shortcode( ).../class-wp-hook.php:310
130.17917748560preg_replace_callback ( ).../shortcodes.php:273
141.13777750416do_shortcode_tag( ).../shortcodes.php:273
151.13777750416bicluster_motifs_shortcode( ).../shortcodes.php:433
161.13787750544file_get_contents ( ).../short_codes.php:74
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

  • Rv0491
  • Rv0615
  • Rv1333
  • Rv1603
  • Rv1939
  • Rv2131c
  • Rv2153c
  • Rv2181
  • Rv2217
  • Rv2326c
  • Rv2368c
  • Rv2471
  • Rv2552c
  • Rv2589
  • Rv2678c
  • Rv2848c
  • Rv3297
  • Rv3552
  • Rv3785

Bicluster Conditions

  • H37Rv.0.05..SDS.exposure.for.1h.rep.2
  • H37Rv.0.05..SDS.exposure.for.1h.rep.3
  • H37Rv.0.05..SDS.exposure.for.1h.rep.4
  • H37Rv.0.05..SDS.exposure.for.1h.rep.5
  • MTB.strain.1254.Ctrl.vs.high.aeration.rep1
  • MTB.strain.1254.Ctrl.vs.high.aeration.rep2
  • MTB.strain.1254.Ctrl.vs.high.aeration.rep3
  • H37Rv.vs..H37Rv.SDS.treated.rep.1
  • H37Rv.vs..H37Rv.SDS.treated.rep.6
  • High.iron.wt.vs.low.iron.wt.1a
  • High.iron.wt.vs.low.iron.wt.2a
  • High.iron.wt.vs.low.iron.wt.3b
  • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
  • MTB1254_SDS_90MIN_01
  • SDS_60min_01
  • H37Rv.reaeration.for.1hrs.rep.5
  • H37Rv.reaeration.for.1hrs.rep.6
  • H37Rv.reaeration.for.1hrs.rep.8
  • H37Rv.reaeration.for.4hrs.rep.5
  • H37Rv.reaeration.for.4hrs.rep.6
  • H37Rv.reaeration.for.4hrs.rep.7
  • H37Rv.reaeration.for.4hrs.rep.8
  • H37Rv.reaeration.for.6hrs.rep.3
  • H37Rv.reaeration.for.6hrs.rep.5
  • H37Rv.reaeration.for.12hrs.rep.1
  • H37Rv.reaeration.for.12hrs.rep.2
  • H37Rv.reaeration.for.12hrs.rep.4
  • H37Rv.reaeration.for.12hrs.rep.6
  • H37Rv.reaeration.for.24hrs.rep.1
  • H37Rv.reaeration.for.24hrs.rep.2
  • H37Rv.reaeration.for.24hrs.rep.4
  • H37Rv.reaeration.for.24hrs.rep.5
  • H37Rv.reaeration.for.24hrs.rep.6
  • X10ug.mL..59vsDMSO..6h
  • X10ug.mL..59vsDMSO..6hA
  • X1ug.mL..109vsDMSO..6h
  • X10ug.mL..109.DMSO..6h
  • X10ug.mL..109vsDMSO..6h
  • X10ug.mL..109vsDMSO..6hA
  • X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053.
  • X1ug.mL..241vsDMSO..6hA
  • X10ug.mL..241.DMSO..6h
  • X10ug.mL..241vsDMSO..6h
  • X.241..10ug.mL..DMSO..12h..2
  • X20ug.mL.Prcp.6776.DMSO..6h..1
  • X20ug.mL.Procept6776vsDMSO..6h
  • X30ug.mLProcept6776vsDMSO.6h
  • X30ug.mLProcept6776vsDMSO.6hA
  • X20ug.mL.Prcp.6778.DMSO..6h..1
  • X20ug.mLProcept6778vsDMSO.6hB
  • X40ug.mLProcept6778vsDMSO.6h
  • X40ug.mLProcept6778vsDMSO.6hA
  • X10ug.mL.PA.1vsDMSO..6h
  • X50ug.mL.PA.21vsDMSO..6hA
  • X0.2ug.mL.PA824.DMSO..6h..2
  • X0.4ug.mL.PA824.DMSO..6h..1
  • X0.4ug.mL.PA824.DMSO..6h..2
  • X0.4ug.mL.PA824.DMSO..6h..3
  • X0.4ug.mL.PA824.DMSO..6h..4
  • X2ug.mL.PA824.DMSO..6h..2
  • DIPED.5ug.mL.vs.DMSO.12h.1
  • DIPED.5ug.mL.vs.DMSO.12h.2
  • DIPED.10ug.mL.vs.DMSO.12h.1
  • DIPED.10ug.mL.vs.DMSO.12h.2
  • DIPED..100ug.mL..DMSO..12h..3
  • X0.1mg.mL.TriclosanvsEtOH..6h
  • X10ug.mL.TriclosanvsDMSO..6h
  • X10ug.mL.TriclosanvsDMSO..6hA
  • X10ug.mL.TriclosanvsDMSO..6hB
  • X50ug.mL.Triclosan.DMSO..6h
  • X50ug.mL.Triclosan.EtOH
  • X50ug.mL.TriclosanvsEtOH..6hA
  • EMB.10ug.mL.vs.DMSO.12h.4
  • X20ug.mL.ethambutol.DMSO
  • X0.2mg.mL.AmpvsEtOH..6h
  • X0.2mg.mL.AmpvsEtOH..6hC
  • X12.5ug.mL.AntimycinvsDMSO..6h
  • X25ug.mL.AntimycinvsDMSO..6h
  • X50ug.mLAntimycinAvsDMSO..6hA
  • X0.32ug.mL.CervsEtOH..6h
  • X0.32ug.mL.CervsEtOH..6hA
  • X0.5ug.mL.CervsEtOH..6h
  • X0.5ug.mL.CervsEtOH..6hA
  • X0.5ug.mL.CeruleninvsDMSO..6hA
  • X0.5ug.mL.CeruleninvsDMSO..6hB
  • X100ug.mL.Ceph.DMSO..6h
  • X100ug.mLCephalexinvsEtOH.6hA
  • X12ug.mLEthionamidevsEtOH.6h
  • X40ug.mL.EtavsEtOH..6h
  • X0.4ug.mL.INHvsEtOH..6h
  • X10ug.mL.methoxatinvsDMSO..6h.A
  • X2mMb.mercaptoethanolvsDMSO.6h
  • X130ug.mL.TLMvsDMSO..6h
  • X130ug.mL.TLMvsDMSO..6hA
  • X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
  • X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
  • X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.x
  • X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3
  • X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.4
  • X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1.x
  • X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
  • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1
  • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.2
  • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.x
  • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
  • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
  • X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1
  • X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
  • X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
  • X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
  • X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1
  • X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2
  • X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
  • X130ug.ml.TLM.vs.DMSO.6hrs.rep.2
  • X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
  • X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
  • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
  • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2
  • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
  • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
  • X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
  • X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2
  • MTB1254.3524.1._INH_20MIN
  • MTB1254_INH_20MIN
  • X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.y
  • X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1.y
  • H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
  • H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
  • H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
  • H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1
  • H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2
  • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.1
  • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
  • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.2
  • MTB.at.T0..biological.rep1
  • MTB.at.T0..biological.rep2
  • MTB.at.T60..biological.rep2
  • MTB.at.T180..biological.rep4
  • MTB.at.T360..biological.rep1