Bicluster – MTB EGRIN 2.0

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1110	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1136	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1749	7718136	get_template_part( )	.../page.php:28
6	0.1749	7718712	locate_template( )	.../general-template.php:206
7	0.1749	7718840	load_template( )	.../template.php:720
8	0.1749	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1757	7736328	the_content( )	.../content-page.php:22
10	0.1758	7736576	apply_filters( )	.../post-template.php:256
11	0.1758	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1767	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1768	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.5639	7749520	do_shortcode_tag( )	.../shortcodes.php:273
15	0.5640	7749520	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	0.5641	7749648	file_get_contents ( )	.../short_codes.php:74

ID: 552fd0f9b744335b89d8f9c3
# Conditions: 163
# Genes: 24
Residual: 0.41265301576538

Bicluster Motifs

Bicluster Genes

Rv0160c
Rv0195
Rv0322
Rv0323c
Rv0453
Rv0494
Rv0970
Rv1800
Rv1931c
Rv1966
Rv1995
Rv2250c
Rv2489c
Rv2514c
Rv2668
Rv2730
Rv2896c
Rv3178
Rv3333c
Rv3415c
Rv3539
Rv3787c
Rv3912

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.2
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
High.iron.wt.vs.low.iron.wt.1a
High.iron.wt.vs.low.iron.wt.1b
High.iron.wt.vs.low.iron.wt.2a
High.iron.wt.vs.low.iron.wt.3a
High.iron.wt.vs.low.iron.wt.3b
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
H37Rv.0.2..Oxygen..2h..5
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.5
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6
NRP.Day6..2
NRP.Day8..2
NRP.Day14..6
NRP.Day20..1
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..4h.
X25J.UV.ctrl..2h.
X40mJ.UV.ctrl..6h.
X60J.UV.ctrl..2h.
H37Rv.hypoxia.4hr.rep.1
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.4hr.rep.6
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.8hr.rep.3
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.9
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.1
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
H37Rv.diamide.1h.rep.3
H37Rv.diamide.1h.rep.4
H37Rv.diamide.1h.rep.5
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.5
CHP_25uM_2h_01
Mtb.Erdman.strain.2000.ppm.CO.rep.1
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.1
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.G0_N5A02cy.5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG7.DT0_N11A04cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.C.Day.0.post_N27A08cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG.ISB.3.0C_N30A02cy.3
SG2.D2_N02A03c5
SG2.A3_N02A04c3
SG2.D3_N02A04c5
SG8.A.Day.5_N37A10cy.3
SG2.A5_N02A05c3
SG2.D7_N02A06c5
SG2.B7_N02A10c5
SG6_A7_N7A12cy.3
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.C0_N32A05cy.5
SG12.B0_N32A09cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.C2_N32A07cy.5
SG12.A4_N32A04cy.3
SG12.B4_N32A12cy.3
SG12.A6_N32A05cy.3
SG12.B6_N32A01cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG12.C24_N32A11cy.5
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG6D.T8_N11A03cy.3
SG6.D8_N5A09cy.5
SG6.C8_N5A08cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8B_N11A06cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG.ISB.3.8D_N30A06cy.3
SG6.D11_N8A09cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG7.T12A_N11A09cy.3
SG12.C120_N32A12cy.5
SG12.B120_N32A04cy.5
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12C_N30A07cy.5
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5
SG6D.T14_N11A04cy.3
A00437_Q1_t30_diamide
A00437_Q3_t90_diamide
A00436_Q1_t30_diamide
A00436_Q3_t90_diamide

Column members cluster 552fd0f9b744335b89d8f9c3 Species (TODO)

MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.2
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5
MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
High.iron.wt.vs.low.iron.wt.1a
High.iron.wt.vs.low.iron.wt.1b
High.iron.wt.vs.low.iron.wt.2a
High.iron.wt.vs.low.iron.wt.3a
High.iron.wt.vs.low.iron.wt.3b
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
H37Rv.0.2..Oxygen..2h..5
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.5
H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6
NRP.Day6..2
NRP.Day8..2
NRP.Day14..6
NRP.Day20..1
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..4h.
X25J.UV.ctrl..2h.
X40mJ.UV.ctrl..6h.
X60J.UV.ctrl..2h.
H37Rv.hypoxia.4hr.rep.1
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.4hr.rep.6
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.8hr.rep.3
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.9
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.1
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
H37Rv.diamide.1h.rep.3
H37Rv.diamide.1h.rep.4
H37Rv.diamide.1h.rep.5
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.5
CHP_25uM_2h_01
Mtb.Erdman.strain.2000.ppm.CO.rep.1
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.1
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.G0_N5A02cy.5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.BT0_N11A02cy.5
SG7.CT0_N11A03cy.5
SG7.DT0_N11A04cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.C.Day.0.post_N27A08cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG.ISB.3.0C_N30A02cy.3
SG2.D2_N02A03c5
SG2.A3_N02A04c3
SG2.D3_N02A04c5
SG8.A.Day.5_N37A10cy.3
SG2.A5_N02A05c3
SG2.D7_N02A06c5
SG2.B7_N02A10c5
SG6_A7_N7A12cy.3
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.C0_N32A05cy.5
SG12.B0_N32A09cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.C2_N32A07cy.5
SG12.A4_N32A04cy.3
SG12.B4_N32A12cy.3
SG12.A6_N32A05cy.3
SG12.B6_N32A01cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG12.C24_N32A11cy.5
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG6D.T8_N11A03cy.3
SG6.D8_N5A09cy.5
SG6.C8_N5A08cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8B_N11A06cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG.ISB.3.8D_N30A06cy.3
SG6.D11_N8A09cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG7.T12A_N11A09cy.3
SG12.C120_N32A12cy.5
SG12.B120_N32A04cy.5
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12C_N30A07cy.5
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5
SG6D.T14_N11A04cy.3
A00437_Q1_t30_diamide
A00437_Q3_t90_diamide
A00436_Q1_t30_diamide
A00436_Q3_t90_diamide