Bicluster – MTB EGRIN 2.0

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_info/552fd067b744335b89d8f585): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 666
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.2040	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.2088	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.3215	7718136	get_template_part( )	.../page.php:28
6	0.3215	7718712	locate_template( )	.../general-template.php:206
7	0.3216	7718840	load_template( )	.../template.php:720
8	0.3216	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.3229	7736328	the_content( )	.../content-page.php:22
10	0.3232	7736576	apply_filters( )	.../post-template.php:256
11	0.3232	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.3247	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.3249	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.3249	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.3249	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433
16	0.3250	7749384	file_get_contents ( )	.../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.2040	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.2088	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.3215	7718136	get_template_part( )	.../page.php:28
6	0.3215	7718712	locate_template( )	.../general-template.php:206
7	0.3216	7718840	load_template( )	.../template.php:720
8	0.3216	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.3229	7736328	the_content( )	.../content-page.php:22
10	0.3232	7736576	apply_filters( )	.../post-template.php:256
11	0.3232	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.3247	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.3249	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.3249	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.3249	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.2040	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.2088	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.3215	7718136	get_template_part( )	.../page.php:28
6	0.3215	7718712	locate_template( )	.../general-template.php:206
7	0.3216	7718840	load_template( )	.../template.php:720
8	0.3216	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.3229	7736328	the_content( )	.../content-page.php:22
10	0.3232	7736576	apply_filters( )	.../post-template.php:256
11	0.3232	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.3247	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.3249	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.3249	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.3249	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.2040	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.2088	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.3215	7718136	get_template_part( )	.../page.php:28
6	0.3215	7718712	locate_template( )	.../general-template.php:206
7	0.3216	7718840	load_template( )	.../template.php:720
8	0.3216	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.3229	7736328	the_content( )	.../content-page.php:22
10	0.3232	7736576	apply_filters( )	.../post-template.php:256
11	0.3232	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.3247	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.3249	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.3249	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.3249	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.2040	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.2088	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.3215	7718136	get_template_part( )	.../page.php:28
6	0.3215	7718712	locate_template( )	.../general-template.php:206
7	0.3216	7718840	load_template( )	.../template.php:720
8	0.3216	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.3229	7736328	the_content( )	.../content-page.php:22
10	0.3232	7736576	apply_filters( )	.../post-template.php:256
11	0.3232	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.3247	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.3249	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.3249	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.3249	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.2040	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.2088	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.3215	7718136	get_template_part( )	.../page.php:28
6	0.3215	7718712	locate_template( )	.../general-template.php:206
7	0.3216	7718840	load_template( )	.../template.php:720
8	0.3216	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.3229	7736328	the_content( )	.../content-page.php:22
10	0.3232	7736576	apply_filters( )	.../post-template.php:256
11	0.3232	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.3247	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.3249	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.3249	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.3249	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_pssms/552fd067b744335b89d8f585): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 74
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.2040	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.2088	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.3215	7718136	get_template_part( )	.../page.php:28
6	0.3215	7718712	locate_template( )	.../general-template.php:206
7	0.3216	7718840	load_template( )	.../template.php:720
8	0.3216	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.3229	7736328	the_content( )	.../content-page.php:22
10	0.3232	7736576	apply_filters( )	.../post-template.php:256
11	0.3232	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.3247	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.3249	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	1.0332	7750416	do_shortcode_tag( )	.../shortcodes.php:273
15	1.0332	7750416	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	1.0333	7750544	file_get_contents ( )	.../short_codes.php:74

ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

Rv0212c
Rv0268c
Rv0324
Rv0586
Rv0750
Rv0989c
Rv1740
Rv1804c
Rv2358
Rv2506
Rv2657c
Rv3451
Rv3636

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..3
NRP.Day8..2
NRP.Day8..3
NRP.Day10..2
NRP.Day12..1
NRP.Day12..2
NRP.Day14..1
NRP.Day14..2
NRP.Day14..3
NRP.Day14..5
NRP.Day14..7
NRP.Day14..8
NRP.Day14..9
NRP.Day30..1
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
Starvation_1254_OA50_12h_02
Starvation_1254_OA50_12h_03
Starvation_1254_OA50_12h_04
Starvation_1254_OA50_24h_01
Starvation_1254_OA50_24h_02
Starvation_1254_OA50_3d_02
Starvation_1254_OA50_3d_04
Starvation_1254_OA50_6h_01
Starvation_1254_OA50_6h_02
Starvation_1254_OA50_6h_03
Starvation_1254_PA50_24h_01
Starvation_1254_PA50_24h_02
Starvation_1254_PA50_24h_04
Starvation_1254_PA50_6h_02
Starvation_OA50_24h_01
Starvation_OA50_24h_02
Starvation_OA50_24h_03
Starvation_OA50_6h_02
Starvation_OA50_6h_03
Starvation_OA50_6h_04
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.DT0_N11A04cy.5
SG8.C.Day.1_N37A11cy.5
SG8.C.Day.1_N27A09cy.3
SG8.D.Day.1_N27A12cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG6.C1_N5A04cy.5
SG2.D1_N02A02c5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.A.Day.2_N37A08cy.3
SG8.C.Day.2_N37A12cy.5
SG8.B.Day.2_N37A06cy.5
SG2.B2_N02A11c3
SG2.D2_N02A03c5
SG8.A.Day.3_N37A09cy.3
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG6D.T7_N11A02cy.3
SG8.B.Day.7_N37A09cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.B0_N32A09cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.C2_N32A07cy.5
SG12.A4_N32A04cy.3
SG12.B4_N32A12cy.3
SG12.A6_N32A05cy.3
SG12.B6_N32A01cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG.ISB.3.8A_N30A04cy.5
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG6.D11_N8A09cy.5
SG6.C11_N5A12cy.5
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG12.C120_N32A12cy.5
SG6.A14_N8A10cy.5
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5

Column members cluster 552fd067b744335b89d8f585 Species (TODO)

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..3
NRP.Day8..2
NRP.Day8..3
NRP.Day10..2
NRP.Day12..1
NRP.Day12..2
NRP.Day14..1
NRP.Day14..2
NRP.Day14..3
NRP.Day14..5
NRP.Day14..7
NRP.Day14..8
NRP.Day14..9
NRP.Day30..1
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
Starvation_1254_OA50_12h_02
Starvation_1254_OA50_12h_03
Starvation_1254_OA50_12h_04
Starvation_1254_OA50_24h_01
Starvation_1254_OA50_24h_02
Starvation_1254_OA50_3d_02
Starvation_1254_OA50_3d_04
Starvation_1254_OA50_6h_01
Starvation_1254_OA50_6h_02
Starvation_1254_OA50_6h_03
Starvation_1254_PA50_24h_01
Starvation_1254_PA50_24h_02
Starvation_1254_PA50_24h_04
Starvation_1254_PA50_6h_02
Starvation_OA50_24h_01
Starvation_OA50_24h_02
Starvation_OA50_24h_03
Starvation_OA50_6h_02
Starvation_OA50_6h_03
Starvation_OA50_6h_04
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.DT0_N11A04cy.5
SG8.C.Day.1_N37A11cy.5
SG8.C.Day.1_N27A09cy.3
SG8.D.Day.1_N27A12cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG6.C1_N5A04cy.5
SG2.D1_N02A02c5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.A.Day.2_N37A08cy.3
SG8.C.Day.2_N37A12cy.5
SG8.B.Day.2_N37A06cy.5
SG2.B2_N02A11c3
SG2.D2_N02A03c5
SG8.A.Day.3_N37A09cy.3
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG6D.T7_N11A02cy.3
SG8.B.Day.7_N37A09cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.B0_N32A09cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.C2_N32A07cy.5
SG12.A4_N32A04cy.3
SG12.B4_N32A12cy.3
SG12.A6_N32A05cy.3
SG12.B6_N32A01cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG.ISB.3.8A_N30A04cy.5
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG6.D11_N8A09cy.5
SG6.C11_N5A12cy.5
SG7.T12C_N11A11cy.3
SG7.T12B_N11A10cy.3
SG12.C120_N32A12cy.5
SG6.A14_N8A10cy.5
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5