Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.20517193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.21007197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32467718136get_template_part( ).../page.php:28
60.32467718712locate_template( ).../general-template.php:206
70.32467718840load_template( ).../template.php:720
80.32467719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.32597736328the_content( ).../content-page.php:22
100.32627736576apply_filters( ).../post-template.php:256
110.32627736976WP_Hook->apply_filters( ).../plugin.php:205
120.32777742504do_shortcode( ).../class-wp-hook.php:310
130.32797748560preg_replace_callback ( ).../shortcodes.php:273
142.47517757480do_shortcode_tag( ).../shortcodes.php:273
152.47527757952bicluster_genes_shortcode( ).../shortcodes.php:433
162.47537758456file_get_contents ( ).../short_codes.php:15
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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.20517193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.21007197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32467718136get_template_part( ).../page.php:28
60.32467718712locate_template( ).../general-template.php:206
70.32467718840load_template( ).../template.php:720
80.32467719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.32597736328the_content( ).../content-page.php:22
100.32627736576apply_filters( ).../post-template.php:256
110.32627736976WP_Hook->apply_filters( ).../plugin.php:205
120.32777742504do_shortcode( ).../class-wp-hook.php:310
130.32797748560preg_replace_callback ( ).../shortcodes.php:273
142.47517757480do_shortcode_tag( ).../shortcodes.php:273
152.47527757952bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.20517193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.21007197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32467718136get_template_part( ).../page.php:28
60.32467718712locate_template( ).../general-template.php:206
70.32467718840load_template( ).../template.php:720
80.32467719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.32597736328the_content( ).../content-page.php:22
100.32627736576apply_filters( ).../post-template.php:256
110.32627736976WP_Hook->apply_filters( ).../plugin.php:205
120.32777742504do_shortcode( ).../class-wp-hook.php:310
130.32797748560preg_replace_callback ( ).../shortcodes.php:273
142.47517757480do_shortcode_tag( ).../shortcodes.php:273
152.47527757952bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.20517193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.21007197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.32467718136get_template_part( ).../page.php:28
60.32467718712locate_template( ).../general-template.php:206
70.32467718840load_template( ).../template.php:720
80.32467719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.32597736328the_content( ).../content-page.php:22
100.32627736576apply_filters( ).../post-template.php:256
110.32627736976WP_Hook->apply_filters( ).../plugin.php:205
120.32777742504do_shortcode( ).../class-wp-hook.php:310
130.32797748560preg_replace_callback ( ).../shortcodes.php:273
142.47517757480do_shortcode_tag( ).../shortcodes.php:273
152.47527757952bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552fc823b744335b89d8c5ed
# Conditions: 258
# Genes: 24
Residual: 0.45956488753147

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • High.iron.wt.vs.low.iron.wt.1a
    • High.iron.wt.vs.low.iron.wt.1b
    • High.iron.wt.vs.low.iron.wt.3a
    • Whole.Lung.Surfactant.2hrs.rep.1
    • Whole.Lung.Surfactant.2hrs.rep.2
    • Whole.Lung.Surfactant.2hrs.rep.3
    • Whole.Lung.Surfactant.30min.rep.1
    • Whole.Lung.Surfactant.30min.rep.2
    • Whole.Lung.Surfactant.30min.rep.3
    • Whole.Lung.Surfactant.30min.rep.4
    • Whole.Lung.Surfactant.30min.rep.5
    • Extracted.Lung.Surfactant.2hrs.rep.1
    • Extracted.Lung.Surfactant.2hrs.rep.2
    • Extracted.Lung.Surfactant.30min.rep.1
    • Extracted.Lung.Surfactant.30min.rep.2
    • Extracted.Lung.Surfactant.30min.rep.4
    • Purified.Surfactant.Lipids.2hrs.rep.2
    • Purified.Human.SP.A.Coated.2hrs.rep1
    • Purified.Human.SP.A.Coated.2hrs.rep2
    • Purified.Human.SP.A.Uncoated.2hrs.rep1
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
    • AA_10uM_10.min_01
    • AA_10uM_10min_01
    • AA_30uM_10.min_05
    • AA_30uM_10.min_06
    • AA_30uM_10m_01
    • AA_30uM_10min_02
    • AA_30uM_1h_01
    • AA_30uM_1h_06
    • AA_30uM_1h_07
    • AA_30uM_24h_02
    • AA_30uM_24h_03
    • AA_30uM_24h_04
    • AA_30uM_2h_01
    • AA_30uM_2h_02
    • AA_30uM_2h_05
    • AA_30uM_2h_06
    • AA_30uM_30min_01
    • AA_30uM_30min_02
    • AA_30uM_30min_05
    • AA_30uM_4h_02
    • AA_30uM_4h_04
    • AA_30uM_4h_05
    • AA_30uM_4h_06
    • AA_30uM_4h_07
    • AA_30uM_4h_08
    • AA_30uM_4h_09
    • AA_3uM_10.min_01
    • AA_60uM_24h_01
    • AA_60uM_24h_02
    • AA_60uM_24h_03
    • L2A_30uM_10min_05
    • L2A_30uM_10min_06
    • L2A_30uM_10min_07
    • L2A_30uM_10min_08
    • L2A_30uM_1h_01
    • L2A_30uM_1h_02
    • L2A_30uM_1h_03
    • L2A_30uM_1h_06
    • L2A_30uM_2h_01
    • L2A_30uM_2h_02
    • L2A_30uM_2h_03
    • L2A_30uM_2h_04
    • L2A_30uM_30min_01
    • L2A_30uM_30min_02
    • L2A_30uM_30min_05
    • L2A_30uM_4h_03
    • L2A_30uM_4h_04
    • L2A_30uM_4h_05
    • L2A_30uM_4h_06
    • L2A_30uM_4h_07
    • L2A_30uM_4h_08
    • LAA_50uM_10min_01
    • LAA_50uM_10min_02
    • OA_50uM_10min_06
    • OA_50uM_10min_07
    • OA_50uM_1h_01
    • OA_50uM_1h_02
    • OA_50uM_1h_05
    • OA_50uM_1h_06
    • OA_50uM_1h_07
    • OA_50uM_1h_08
    • OA_50uM_1h_09
    • OA_50uM_24h_01
    • OA_50uM_24h_02
    • OA_50uM_24h_03
    • OA_50uM_24h_04
    • OA_50uM_24h_05
    • OA_50uM_24h_06
    • OA_50uM_2h_02
    • OA_50uM_2h_04
    • OA_50uM_2h_08
    • OA_50uM_2h_09
    • OA_50uM_30min_01
    • OA_50uM_30min_03
    • OA_50uM_30min_04
    • OA_50uM_30min_07
    • OA_50uM_30min_08
    • OA_50uM_30min_09
    • OA_50uM_4h_03
    • OA_50uM_4h_04
    • OA_50uM_4h_05
    • OA_50uM_4h_07
    • OA_50uM_4h_08
    • PA_10uM_10min_02
    • PA_5.uM_10min_02
    • PA_50uM_10.min_02
    • PA_50uM_10.min_03
    • PA_50uM_10min_01
    • PA_50uM_10min_04
    • PA_50uM_10min_05
    • PA_50uM_10min_06
    • PA_50uM_10min_07
    • PA_50uM_10min_08
    • PA_50uM_10min_09
    • PA_50uM_12h_01
    • PA_50uM_12h_02
    • PA_50uM_12h_03
    • PA_50uM_12h_05
    • PA_50uM_12h_06
    • PA_50uM_1h_01
    • PA_50uM_1h_04
    • PA_50uM_1h_06
    • PA_50uM_1h_07
    • PA_50uM_1h_08
    • PA_50uM_1h_09
    • PA_50uM_1h_12
    • PA_50uM_24h_03
    • PA_50uM_24h_04
    • PA_50uM_24h_07
    • PA_50uM_24h_08
    • PA_50uM_24h_09
    • PA_50uM_24h_10
    • PA_50uM_2h_01
    • PA_50uM_2h_02
    • PA_50uM_2h_03
    • PA_50uM_2h_04
    • PA_50uM_2h_06
    • PA_50uM_2h_07
    • PA_50uM_30.min_05
    • PA_50uM_30.min_06
    • PA_50uM_30.min_07
    • PA_50uM_30min_08
    • PA_50uM_30min_11
    • PA_50uM_3d_01
    • PA_50uM_3d_02
    • PA_50uM_3d_03
    • PA_50uM_3d_04
    • PA_50uM_3d_05
    • PA_50uM_3d_06
    • PA_50uM_4h
    • PA_50uM_4h_02
    • PA_50uM_4h_04
    • PA_50uM_8h_04
    • PA_50uM_8h_06
    • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
    • BCG.2hr.phagosomal.profile
    • M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
    • MTB.in.Wild.type.macrophages.for.4hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
    • Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
    • Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
    • Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
    • Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
    • Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
    • Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
    • Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
    • X10ug.mL..59.DMSO..6h
    • X10ug.mL..109.DMSO..6h
    • X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050.
    • X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051.
    • X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052.
    • X10ug.mL..241.DMSO..6h
    • X.241..1ug.mL..DMSO..12h..1
    • X40ug.mL.5CL.pH5.6..2h..2
    • X0.12mg.mL.BZAvspH5.6..11h.
    • X0.12mg.mL.PZA.pH5.6..5h.
    • X0.12mg.mL.PZAvspH5.6..6h.
    • X0.12mg.mL.PZAvspH5.6..6h.A
    • X1.2mg.mL.PZAvspH5.6..4h.A
    • X1.2mg.mL.PZAvspH5.6..4h.B
    • X1.2mg.mL.PZA.pH5.6..5h.
    • X1.2mg.mL.PZAvspH5.6..6h.A
    • X1.2mg.mL.PZAvspH5.6..7h.A
    • X1.2mg.mL.PZAvspH5.6..16h.
    • DIPED.5ug.mL.vs.DMSO.12h.1
    • DIPED.5ug.mL.vs.DMSO.12h.2
    • DIPED.10ug.mL.vs.DMSO.12h.1
    • DIPED..50ug.mL..DMSO..12h
    • X10ug.mL.EMBvsDMSO..6hA
    • X0.2mg.mL.AmpvsEtOH..6h
    • X0.2mg.mL.AmpvsEtOH..6hA
    • X0.32ug.mL.CervsEtOH..6h
    • X0.32ug.mL.CervsEtOH..6hA
    • X0.5ug.mL.CervsEtOH..6h
    • X0.5ug.mL.CervsEtOH..6hA
    • X0.5ug.mL.CeruleninvsDMSO..6hA
    • X0.5ug.mL.CeruleninvsDMSO..6hB
    • X0.5ug.mL.CeruleninvsDMSO..6hC
    • X100ug.mL.Cephalexin.Ctrl..6h
    • X130ug.mL.TLMvsDMSO..6hA
    • X0.13mg.mL.TLMvsDMSO..6h
    • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
    • X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
    • X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1
    • X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
    • X130ug.ml.TLM.vs.DMSO.6hrs.rep.2
    • X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
    • X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
    • X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
    • X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
    • X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2
    • MTB1254.3524.1._INH_20MIN
    • MTB1254.3524.2._INH_20MIN
    • MTB1254_INH_20MIN
    • X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
    • X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
    • X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.y
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
    • H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1
    • H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.2
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.2
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
    • H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2
    • H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1