Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.30307718136get_template_part( ).../page.php:28
60.30307718712locate_template( ).../general-template.php:206
70.30307718840load_template( ).../template.php:720
80.30317719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.30437736328the_content( ).../content-page.php:22
100.30457736576apply_filters( ).../post-template.php:256
110.30467736976WP_Hook->apply_filters( ).../plugin.php:205
120.30607742504do_shortcode( ).../class-wp-hook.php:310
130.30627748560preg_replace_callback ( ).../shortcodes.php:273
140.30627749184do_shortcode_tag( ).../shortcodes.php:273
150.30627749184bicluster_info_shortcode( ).../shortcodes.php:433
160.30637749384file_get_contents ( ).../short_codes.php:666
( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.30307718136get_template_part( ).../page.php:28
60.30307718712locate_template( ).../general-template.php:206
70.30307718840load_template( ).../template.php:720
80.30317719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.30437736328the_content( ).../content-page.php:22
100.30457736576apply_filters( ).../post-template.php:256
110.30467736976WP_Hook->apply_filters( ).../plugin.php:205
120.30607742504do_shortcode( ).../class-wp-hook.php:310
130.30627748560preg_replace_callback ( ).../shortcodes.php:273
140.30627749184do_shortcode_tag( ).../shortcodes.php:273
150.30627749184bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.30307718136get_template_part( ).../page.php:28
60.30307718712locate_template( ).../general-template.php:206
70.30307718840load_template( ).../template.php:720
80.30317719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.30437736328the_content( ).../content-page.php:22
100.30457736576apply_filters( ).../post-template.php:256
110.30467736976WP_Hook->apply_filters( ).../plugin.php:205
120.30607742504do_shortcode( ).../class-wp-hook.php:310
130.30627748560preg_replace_callback ( ).../shortcodes.php:273
140.30627749184do_shortcode_tag( ).../shortcodes.php:273
150.30627749184bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.30307718136get_template_part( ).../page.php:28
60.30307718712locate_template( ).../general-template.php:206
70.30307718840load_template( ).../template.php:720
80.30317719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.30437736328the_content( ).../content-page.php:22
100.30457736576apply_filters( ).../post-template.php:256
110.30467736976WP_Hook->apply_filters( ).../plugin.php:205
120.30607742504do_shortcode( ).../class-wp-hook.php:310
130.30627748560preg_replace_callback ( ).../shortcodes.php:273
140.30627749184do_shortcode_tag( ).../shortcodes.php:273
150.30627749184bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.30307718136get_template_part( ).../page.php:28
60.30307718712locate_template( ).../general-template.php:206
70.30307718840load_template( ).../template.php:720
80.30317719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.30437736328the_content( ).../content-page.php:22
100.30457736576apply_filters( ).../post-template.php:256
110.30467736976WP_Hook->apply_filters( ).../plugin.php:205
120.30607742504do_shortcode( ).../class-wp-hook.php:310
130.30627748560preg_replace_callback ( ).../shortcodes.php:273
140.30627749184do_shortcode_tag( ).../shortcodes.php:273
150.30627749184bicluster_info_shortcode( ).../shortcodes.php:433
( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.19397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.19837197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.30307718136get_template_part( ).../page.php:28
60.30307718712locate_template( ).../general-template.php:206
70.30307718840load_template( ).../template.php:720
80.30317719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.30437736328the_content( ).../content-page.php:22
100.30457736576apply_filters( ).../post-template.php:256
110.30467736976WP_Hook->apply_filters( ).../plugin.php:205
120.30607742504do_shortcode( ).../class-wp-hook.php:310
130.30627748560preg_replace_callback ( ).../shortcodes.php:273
140.30627749184do_shortcode_tag( ).../shortcodes.php:273
150.30627749184bicluster_info_shortcode( ).../shortcodes.php:433
ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

  • Rv0185
  • Rv0473
  • Rv0477
  • Rv0478
  • Rv0597c
  • Rv1019
  • Rv1062
  • Rv1705c
  • Rv1790
  • Rv1849
  • Rv2037c
  • Rv2530c
  • Rv2805
  • Rv2870c
  • Rv3225c
  • Rv3226c
  • Rv3242c
  • Rv3292
  • Rv3312c
  • Rv3658c
  • Rv3702c
  • Rv3886c

Bicluster Conditions

  • Strain.1006...replicate.1
  • Strain.1006...replicate.4
  • Strain.1254...replicate.4
  • Strain.1843..replicate.1
  • Strain.3160..replicate.1
  • Strain.3160..replicate.2
  • Strain.3160...replicate.3
  • Strain.3160..replicate.4
  • Strain.9700665..replicate.2
  • Strain.9700665..replicate.4
  • Strain.9802501..replicate1
  • Strain.9802501..replicate.2
  • Strain.9802501..replicate.3
  • Strain.9802826..replicate.1
  • H37Rv.Vs.M.bovis.rep2
  • H37Rv.Vs.M.bovis.rep3
  • H37Rv.Vs.M.bovis.rep4
  • H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
  • H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
  • H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
  • Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
  • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
  • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
  • Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
  • Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
  • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
  • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
  • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
  • H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6
  • Whole.Lung.Surfactant.2hrs.rep.1
  • Whole.Lung.Surfactant.2hrs.rep.3
  • Whole.Lung.Surfactant.30min.rep.1
  • Whole.Lung.Surfactant.30min.rep.4
  • Whole.Lung.Surfactant.30min.rep.5
  • Extracted.Lung.Surfactant.2hrs.rep.2
  • Extracted.Lung.Surfactant.30min.rep.1
  • Purified.Surfactant.Lipids.2hrs.rep.2
  • Purified.Surfactant.Lipids.30min.rep.2
  • Purified.Human.SP.A.Coated.2hrs.rep1
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
  • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
  • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1
  • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3
  • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2
  • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3
  • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
  • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
  • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
  • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
  • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1
  • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.2
  • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4
  • BCG.2hr.phagosomal.profile
  • BCG.24hr.phagosomal.profile
  • M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
  • M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
  • MTB.in.Wild.type.macrophages.for.4hrs
  • MTB.in.Wild.type.macrophages.for.24hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.24hrs
  • MTB.in.Wild.type.macrophages...IFNg.for.48hrs
  • Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
  • Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
  • Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
  • Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
  • Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
  • Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
  • Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
  • hip.mutant.KL2801..biological.rep2
  • hip.mutant.KL2849..biological.rep1
  • hip.mutant.KL2849..biological.rep2
  • hip.mutant.HT1116..biological.rep2
  • hip.mutant.HT1120..biological.rep2
  • hip.mutant.HT1130..biological.rep2
  • hip.mutant.HT1134..biological.rep2
  • hip.mutant.HT1170..biological.rep1