Bicluster – MTB EGRIN 2.0

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_info/552fbab2b744335b89d87030): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 666
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1153	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1180	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1818	7718136	get_template_part( )	.../page.php:28
6	0.1818	7718712	locate_template( )	.../general-template.php:206
7	0.1818	7718840	load_template( )	.../template.php:720
8	0.1819	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1826	7736328	the_content( )	.../content-page.php:22
10	0.1828	7736576	apply_filters( )	.../post-template.php:256
11	0.1828	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1836	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1838	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.1838	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.1838	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433
16	0.1838	7749384	file_get_contents ( )	.../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1153	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1180	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1818	7718136	get_template_part( )	.../page.php:28
6	0.1818	7718712	locate_template( )	.../general-template.php:206
7	0.1818	7718840	load_template( )	.../template.php:720
8	0.1819	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1826	7736328	the_content( )	.../content-page.php:22
10	0.1828	7736576	apply_filters( )	.../post-template.php:256
11	0.1828	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1836	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1838	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.1838	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.1838	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1153	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1180	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1818	7718136	get_template_part( )	.../page.php:28
6	0.1818	7718712	locate_template( )	.../general-template.php:206
7	0.1818	7718840	load_template( )	.../template.php:720
8	0.1819	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1826	7736328	the_content( )	.../content-page.php:22
10	0.1828	7736576	apply_filters( )	.../post-template.php:256
11	0.1828	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1836	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1838	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.1838	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.1838	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1153	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1180	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1818	7718136	get_template_part( )	.../page.php:28
6	0.1818	7718712	locate_template( )	.../general-template.php:206
7	0.1818	7718840	load_template( )	.../template.php:720
8	0.1819	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1826	7736328	the_content( )	.../content-page.php:22
10	0.1828	7736576	apply_filters( )	.../post-template.php:256
11	0.1828	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1836	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1838	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.1838	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.1838	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1153	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1180	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1818	7718136	get_template_part( )	.../page.php:28
6	0.1818	7718712	locate_template( )	.../general-template.php:206
7	0.1818	7718840	load_template( )	.../template.php:720
8	0.1819	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1826	7736328	the_content( )	.../content-page.php:22
10	0.1828	7736576	apply_filters( )	.../post-template.php:256
11	0.1828	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1836	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1838	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.1838	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.1838	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1153	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1180	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1818	7718136	get_template_part( )	.../page.php:28
6	0.1818	7718712	locate_template( )	.../general-template.php:206
7	0.1818	7718840	load_template( )	.../template.php:720
8	0.1819	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1826	7736328	the_content( )	.../content-page.php:22
10	0.1828	7736576	apply_filters( )	.../post-template.php:256
11	0.1828	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1836	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1838	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.1838	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.1838	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

Rv0025
Rv0697
Rv1346
Rv2012
Rv2119
Rv2240c
Rv2416c
Rv2619c
Rv2819c
Rv2972c
Rv2984
Rv3008
Rv3327
Rv3556c

Bicluster Conditions

Strain.CDC1551..replicate.1
Strain.CDC1551..replicate.2
Strain.CDC1551..replicate.3
Strain.CDC1551..replicate.4
Strain.1006...replicate.1
Strain.1006...replicate.2
Strain.1254...replicate.4
Strain.1254...replicate.3
Strain.1254...replicate.1
Strain.1843..replicate.1
Strain.1843...replicate.2
Strain.1843...replicate.3
Strain.3160..replicate.1
Strain.3160..replicate.2
Strain.3160...replicate.3
Strain.3160..replicate.4
Strain.9700665..replicate.1
Strain.9700665..replicate.2
Strain.9700665..replicate.3
Strain.9800608..replicate.1
Strain.9800608..replicate.2
Strain.9800608...replicate.3
Strain.9802501..replicate1
Strain.9802501..replicate.3
Strain.9802826..replicate.3
Strain.M3061a..replicate.1
Strain.M3061a..replicate.2
H37Rv.Vs.M.bovis.rep2
H37Rv.Vs.M.bovis.rep3
High.iron.wt.vs.low.iron.wt.1a
High.iron.wt.vs.low.iron.wt.1b
High.iron.wt.vs.low.iron.wt.2b
High.iron.wt.vs.low.iron.wt.3a
High.iron.wt.vs.low.iron.wt.3b
PBS.Tw.DMSOvs7H9..6h
H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6
Glycerol_1.
Glycerol_1._10M_01
Glycerol_1._30M_01
CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1
CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.2
CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
hip.mutant.KL2801..biological.rep1
hip.mutant.KL2825..biological.rep1
hip.mutant.HTS1090..biological.rep2
hip.mutant.HTS1105..biological.rep1
hip.mutant.HTS1105..biological.rep2
hip.mutant.HT1116..biological.rep1
hip.mutant.HT1116..biological.rep2
hip.mutant.HT1117..biological.rep2
hip.mutant.HT1120..biological.rep1
hip.mutant.HT1130..biological.rep1
hip.mutant.HT1130..biological.rep2
hip.mutant.HT1134..biological.rep1
hip.mutant.HT1137..biological.rep1
hip.mutant.HT1137..biological.rep2
hip.mutant.HT1170..biological.rep2
X20ug.mL.Prcp.6776.DMSO..6h..1
X20ug.mL.Procept.6776vsDMSO..6h
X30ug.mLProcept6776vsDMSO.6hA
X5ug.mLProcept.6778vsDMSO.6hA
X20ug.mL.Prcp.6778.DMSO..6h..1
X20ug.mL.Prcp.6778.DMSO..6h..2
X20ug.mLProcept6778vsDMSO.6h
X20ug.mLProcept6778vsDMSO.6hB
X40ug.mLProcept6778vsDMSO.6h
X10ug.mL.PA.1vsDMSO..6h
X10ug.mL.PA.1vsDMSO..6hA
X10ug.mL.PA.1vsDMSO..6hB
X10ug.mL.PA.21vsDMSO..6h
X10ug.mL.PA.21vsDMSO..6hA
X50ug.mLAntimycinAvsDMSO..6hA
X50ug.mLAntimycinAvsDMSO..6hB
X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.x
X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
MTB.at.T0..biological.rep1
MTB.at.T0..biological.rep2
MTB.at.T0..biological.rep3
MTB.at.T0..biological.rep4
MTB.at.T30..biological.rep1
MTB.at.T30..biological.rep2
MTB.at.T30..biological.rep3
MTB.at.T60..biological.rep1
MTB.at.T60..biological.rep2
MTB.at.T360..biological.rep1
MTB.at.T360..biological.rep2
MTB.at.T360..biological.rep3

Column members cluster 552fbab2b744335b89d87030 Species (TODO)

Strain.CDC1551..replicate.1
Strain.CDC1551..replicate.2
Strain.CDC1551..replicate.3
Strain.CDC1551..replicate.4
Strain.1006...replicate.1
Strain.1006...replicate.2
Strain.1254...replicate.4
Strain.1254...replicate.3
Strain.1254...replicate.1
Strain.1843..replicate.1
Strain.1843...replicate.2
Strain.1843...replicate.3
Strain.3160..replicate.1
Strain.3160..replicate.2
Strain.3160...replicate.3
Strain.3160..replicate.4
Strain.9700665..replicate.1
Strain.9700665..replicate.2
Strain.9700665..replicate.3
Strain.9800608..replicate.1
Strain.9800608..replicate.2
Strain.9800608...replicate.3
Strain.9802501..replicate1
Strain.9802501..replicate.3
Strain.9802826..replicate.3
Strain.M3061a..replicate.1
Strain.M3061a..replicate.2
H37Rv.Vs.M.bovis.rep2
H37Rv.Vs.M.bovis.rep3
High.iron.wt.vs.low.iron.wt.1a
High.iron.wt.vs.low.iron.wt.1b
High.iron.wt.vs.low.iron.wt.2b
High.iron.wt.vs.low.iron.wt.3a
High.iron.wt.vs.low.iron.wt.3b
PBS.Tw.DMSOvs7H9..6h
H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4
H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6
Glycerol_1.
Glycerol_1._10M_01
Glycerol_1._30M_01
CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1
CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2
CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.2
CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2
CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5
hip.mutant.KL2801..biological.rep1
hip.mutant.KL2825..biological.rep1
hip.mutant.HTS1090..biological.rep2
hip.mutant.HTS1105..biological.rep1
hip.mutant.HTS1105..biological.rep2
hip.mutant.HT1116..biological.rep1
hip.mutant.HT1116..biological.rep2
hip.mutant.HT1117..biological.rep2
hip.mutant.HT1120..biological.rep1
hip.mutant.HT1130..biological.rep1
hip.mutant.HT1130..biological.rep2
hip.mutant.HT1134..biological.rep1
hip.mutant.HT1137..biological.rep1
hip.mutant.HT1137..biological.rep2
hip.mutant.HT1170..biological.rep2
X20ug.mL.Prcp.6776.DMSO..6h..1
X20ug.mL.Procept.6776vsDMSO..6h
X30ug.mLProcept6776vsDMSO.6hA
X5ug.mLProcept.6778vsDMSO.6hA
X20ug.mL.Prcp.6778.DMSO..6h..1
X20ug.mL.Prcp.6778.DMSO..6h..2
X20ug.mLProcept6778vsDMSO.6h
X20ug.mLProcept6778vsDMSO.6hB
X40ug.mLProcept6778vsDMSO.6h
X10ug.mL.PA.1vsDMSO..6h
X10ug.mL.PA.1vsDMSO..6hA
X10ug.mL.PA.1vsDMSO..6hB
X10ug.mL.PA.21vsDMSO..6h
X10ug.mL.PA.21vsDMSO..6hA
X50ug.mLAntimycinAvsDMSO..6hA
X50ug.mLAntimycinAvsDMSO..6hB
X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2.x
X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
MTB.at.T0..biological.rep1
MTB.at.T0..biological.rep2
MTB.at.T0..biological.rep3
MTB.at.T0..biological.rep4
MTB.at.T30..biological.rep1
MTB.at.T30..biological.rep2
MTB.at.T30..biological.rep3
MTB.at.T60..biological.rep1
MTB.at.T60..biological.rep2
MTB.at.T360..biological.rep1
MTB.at.T360..biological.rep2
MTB.at.T360..biological.rep3