Bicluster – MTB EGRIN 2.0

ID: 552fa146b744335b89d7e213
# Conditions: 116
# Genes: 28
Residual: 0.4667714172059

Bicluster Motifs

Bicluster Genes

Rv0467
Rv0657c
Rv0848
Rv1285
Rv1286
Rv1375
Rv1664
Rv1813c
Rv1954c
Rv1955
Rv1963c
Rv1988
Rv1998c
Rv2028c
Rv2185c
Rv2205c
Rv2358
Rv2560
Rv2588c
Rv2707
Rv2873
Rv2875
Rv3123
Rv3526
Rv3527
Rv3636
Rv3892c
Rv3903c

Bicluster Conditions

X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.x
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.x
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.24hr.phagosomal.profile
Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5
X5ug.mL.AmivsEtOH..6hA
X10ug.mL.Amikacin.EtOH..6h
X5ug.mL.CapvsEtOH..6hA
X5ug.mL.KCN.DMSO..6h..2
X10ug.mL.RoxvsEtOH..6h
X10ug.mL.RoxvsEtOH..6hA
X30ug.mL.RoxvsEtOH..6h
X30ug.mL.RoxvsEtOH..6hA
X50ug.mL.RoxvsEtOH..6h
X50ug.mL.RoxvsEtOH..6hA
X5ug.mLStreptomycinvsEtOH.6h
X5ug.mLStreptomycinvsEtOH.6hA
X10ug.mL.TetvsEtOH..6h
X10ug.mL.TetvsEtOH..6hA
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_100uM_30M_01
X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A
X10ug.ml.capreomycin.vs.Ethanol..6hrs
X5ug.ml.Streptomycin.vs.Ethanol.6hrs

Column members cluster 552fa146b744335b89d7e213 Species (TODO)

X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.x
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.x
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.24hr.phagosomal.profile
Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5
X5ug.mL.AmivsEtOH..6hA
X10ug.mL.Amikacin.EtOH..6h
X5ug.mL.CapvsEtOH..6hA
X5ug.mL.KCN.DMSO..6h..2
X10ug.mL.RoxvsEtOH..6h
X10ug.mL.RoxvsEtOH..6hA
X30ug.mL.RoxvsEtOH..6h
X30ug.mL.RoxvsEtOH..6hA
X50ug.mL.RoxvsEtOH..6h
X50ug.mL.RoxvsEtOH..6hA
X5ug.mLStreptomycinvsEtOH.6h
X5ug.mLStreptomycinvsEtOH.6hA
X10ug.mL.TetvsEtOH..6h
X10ug.mL.TetvsEtOH..6hA
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_100uM_30M_01
X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A
X10ug.ml.capreomycin.vs.Ethanol..6hrs
X5ug.ml.Streptomycin.vs.Ethanol.6hrs