Bicluster – MTB EGRIN 2.0

ID: 552fa146b744335b89d7e143
# Conditions: 111
# Genes: 25
Residual: 0.51087098432093

Bicluster Motifs

Bicluster Genes

Rv0333
Rv0653c
Rv0750
Rv0827c
Rv0947c
Rv1046c
Rv1151c
Rv1160
Rv1439c
Rv1762c
Rv1785c
Rv1786
Rv1787
Rv1788
Rv1903
Rv1926c
Rv1959c
Rv1960c
Rv1984c
Rv2023c
Rv2238c
Rv2387
Rv3117
Rv3519
Rv3651

Bicluster Conditions

X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.x
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
MTB.in.Wild.type.macrophages.for.48hrs
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1
X5ug.mL.AmivsEtOH..6h
X5ug.mL.AmivsEtOH..6hA
X5ug.mL.KCN.DMSO..6h..2
X10ug.mL.RoxvsEtOH..6h
X10ug.mL.RoxvsEtOH..6hA
X30ug.mL.RoxvsEtOH..6h
X30ug.mL.RoxvsEtOH..6hA
X50ug.mL.RoxvsEtOH..6h
X50ug.mL.RoxvsEtOH..6hA
X5ug.mLStreptomycinvsEtOH.6hA
X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.y
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_100uM_30M_01
Tet_50ng_30M_01
X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A
X5ug.ml.Streptomycin.vs.Ethanol.6hrs

Column members cluster 552fa146b744335b89d7e143 Species (TODO)

X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.x
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
BCG.2hr.phagosomal.profile
BCG.24hr.phagosomal.profile
M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
MTB.in.Wild.type.macrophages.for.48hrs
Russell_Lab_Spotted_Oligos_1.2..14.day.resting.macrophage.infection.2hr..rep.2..Russell_Lab_Spotted_Oligos_1.2..
Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.2
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.4
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.2
MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.4
MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.2
MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.2
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.4
MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1
X5ug.mL.AmivsEtOH..6h
X5ug.mL.AmivsEtOH..6hA
X5ug.mL.KCN.DMSO..6h..2
X10ug.mL.RoxvsEtOH..6h
X10ug.mL.RoxvsEtOH..6hA
X30ug.mL.RoxvsEtOH..6h
X30ug.mL.RoxvsEtOH..6hA
X50ug.mL.RoxvsEtOH..6h
X50ug.mL.RoxvsEtOH..6hA
X5ug.mLStreptomycinvsEtOH.6hA
X5ug.ml.KCN.vs.DMSO.6hrs.rep.1.y
X5ug.ml.KCN.vs.DMSO.6hrs.rep.2.y
Tet_100uM_30M_01
Tet_50ng_30M_01
X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A
X5ug.ml.Streptomycin.vs.Ethanol.6hrs