Bicluster – MTB EGRIN 2.0

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_pssms/552f9f7fb744335b89d7d736): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 74
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1134	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1161	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1786	7718136	get_template_part( )	.../page.php:28
6	0.1786	7718712	locate_template( )	.../general-template.php:206
7	0.1786	7718840	load_template( )	.../template.php:720
8	0.1786	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1794	7736328	the_content( )	.../content-page.php:22
10	0.1795	7736576	apply_filters( )	.../post-template.php:256
11	0.1795	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1804	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1805	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.8095	7749520	do_shortcode_tag( )	.../shortcodes.php:273
15	0.8095	7749520	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	0.8096	7749648	file_get_contents ( )	.../short_codes.php:74

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_genes/552f9f7fb744335b89d7d736): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 15
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1134	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1161	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1786	7718136	get_template_part( )	.../page.php:28
6	0.1786	7718712	locate_template( )	.../general-template.php:206
7	0.1786	7718840	load_template( )	.../template.php:720
8	0.1786	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1794	7736328	the_content( )	.../content-page.php:22
10	0.1795	7736576	apply_filters( )	.../post-template.php:256
11	0.1795	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1804	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1805	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	1.3940	7751560	do_shortcode_tag( )	.../shortcodes.php:273
15	1.3940	7752032	bicluster_genes_shortcode( )	.../shortcodes.php:433
16	1.3941	7752536	file_get_contents ( )	.../short_codes.php:15

( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1134	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1161	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1786	7718136	get_template_part( )	.../page.php:28
6	0.1786	7718712	locate_template( )	.../general-template.php:206
7	0.1786	7718840	load_template( )	.../template.php:720
8	0.1786	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1794	7736328	the_content( )	.../content-page.php:22
10	0.1795	7736576	apply_filters( )	.../post-template.php:256
11	0.1795	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1804	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1805	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	1.3940	7751560	do_shortcode_tag( )	.../shortcodes.php:273
15	1.3940	7752032	bicluster_genes_shortcode( )	.../shortcodes.php:433

( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1134	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1161	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1786	7718136	get_template_part( )	.../page.php:28
6	0.1786	7718712	locate_template( )	.../general-template.php:206
7	0.1786	7718840	load_template( )	.../template.php:720
8	0.1786	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1794	7736328	the_content( )	.../content-page.php:22
10	0.1795	7736576	apply_filters( )	.../post-template.php:256
11	0.1795	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1804	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1805	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	1.3940	7751560	do_shortcode_tag( )	.../shortcodes.php:273
15	1.3940	7752032	bicluster_genes_shortcode( )	.../shortcodes.php:433

( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1134	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1161	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1786	7718136	get_template_part( )	.../page.php:28
6	0.1786	7718712	locate_template( )	.../general-template.php:206
7	0.1786	7718840	load_template( )	.../template.php:720
8	0.1786	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1794	7736328	the_content( )	.../content-page.php:22
10	0.1795	7736576	apply_filters( )	.../post-template.php:256
11	0.1795	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1804	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1805	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	1.3940	7751560	do_shortcode_tag( )	.../shortcodes.php:273
15	1.3940	7752032	bicluster_genes_shortcode( )	.../shortcodes.php:433

ID: 552f9f7fb744335b89d7d736
# Conditions: 98
# Genes: 11
Residual: 0.50139004415439

Bicluster Motifs

Bicluster Genes

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
H37Rv.hypoxia.2hr.rep.1
NRP.Day6..1
NRP.Day6..2
NRP.Day6..3
NRP.Day8..1
NRP.Day8..2
NRP.Day8..3
NRP.Day10..1
NRP.Day10..2
NRP.Day10..3
NRP.Day12..1
NRP.Day12..2
NRP.Day12..3
NRP.Day14..1
NRP.Day14..4
NRP.Day14..6
NRP.Day14..7
NRP.Day14..8
NRP.Day20..1
NRP.Day20..2
H37Rv.hypoxia.4hr.rep.1
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.4hr.rep.6
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.5
H37Rv.hypoxia.7.day.rep.7
SG2.A0_N02A01c3
SG6.G0_N5A02cy.5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.BT0_N11A02cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N37A10cy.5
SG8.C.Day.1_N27A09cy.3
SG8.D.Day.1_N27A12cy.3
SG7.AT1_N11A05cy.5
SG6_B1_N7A11cy.5
SG6_A1_N7A11cy.3
SG8.B.Day.2_N37A06cy.5
SG2.A5_N02A05c3
SG2.B5_N02A09c5
SG2.D5_N02A05c5
SG2.D7_N02A06c5
SG6C.T7_N11A01cy.3
SG6_A7_N7A12cy.3
SG7.T7D_N11A11cy.5
SG8.B.Day.7_N37A09cy.5
SG.ISB.3.7A_N30A02cy.5
SG.ISB.3.7B_N30A03cy.3
SG12.C0_N32A05cy.5
SG12.B0_N32A09cy.3
SG12.A0_N32A01cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.A4_N32A04cy.3
SG12.B4_N32A12cy.3
SG12.C4_N32A08cy.5
SG12.C6_N32A09cy.5
SG2.D8_N02A07c5
SG6D.T8_N11A03cy.3
SG6.D8_N5A09cy.5
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8B_N11A06cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG2.D9_N02A08c5
SG6.C11_N5A12cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12A_N11A09cy.3
SG.ISB.3.12D_N30A08cy.3
SG6.B14_N8A11cy.5
SG6D.T14_N11A04cy.3