Bicluster – MTB EGRIN 2.0

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Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0000	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1118	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1144	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.1767	7718136	get_template_part( )	.../page.php:28
6	0.1767	7718712	locate_template( )	.../general-template.php:206
7	0.1767	7718840	load_template( )	.../template.php:720
8	0.1767	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.1775	7736328	the_content( )	.../content-page.php:22
10	0.1776	7736576	apply_filters( )	.../post-template.php:256
11	0.1776	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.1785	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.1786	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.9187	7749520	do_shortcode_tag( )	.../shortcodes.php:273
15	0.9187	7749520	bicluster_motifs_shortcode( )	.../shortcodes.php:433
16	0.9188	7749648	file_get_contents ( )	.../short_codes.php:74

ID: 552f93a7b744335b89d795e3
# Conditions: 177
# Genes: 11
Residual: 0.24352525588087

Bicluster Motifs

Bicluster Genes

Rv0754
Rv0976c
Rv1403c
Rv1805c
Rv1807
Rv1935c
Rv1955
Rv1995
Rv2322c
Rv2874
Rv3179

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
High.iron.wt.vs.low.iron.wt.1b
High.iron.wt.vs.low.iron.wt.2a
High.iron.wt.vs.low.iron.wt.2b
High.iron.wt.vs.low.iron.wt.3a
High.iron.wt.vs.low.iron.wt.3b
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.4
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..2
NRP.Day8..1
NRP.Day8..2
NRP.Day8..3
NRP.Day10..2
NRP.Day10..3
NRP.Day12..1
NRP.Day12..2
NRP.Day12..3
NRP.Day14..2
NRP.Day14..3
NRP.Day14..4
NRP.Day14..5
NRP.Day14..6
NRP.Day14..8
NRP.Day14..9
NRP.Day20..2
NRP.Day30..1
Mtm.0.2ug.mL.vs.ctrl.8h.1.x
Mtm.0.2ug.mL.vs.ctrl.8h.2.x
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.8hr.rep.3
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.9
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.1
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.5
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG.ISB.3.0C_N30A02cy.3
SG2.A2_N02A03c3
SG2.A3_N02A04c3
SG2.D3_N02A04c5
SG2.D7_N02A06c5
SG2.A7_N02A06c3
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG7.T8A_N11A05cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG2.B9_N02A12c5
SG2.D9_N02A08c5
SG12.C120_N32A12cy.5
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12C_N30A07cy.5
X10ug.mL..59.DMSO..6h
X10ug.mL..59vsDMSO..6h
X1ug.mL..109vsDMSO..6h
X1ug.mL..109vsDMSO..6hA
X10ug.mL..109.DMSO..6h
X10ug.mL..109vsDMSO..6hA
X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050.
X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052.
X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053.
X.109..10ug.mL..DMSO..12h..replicate.2..GEO.acc..GSM28054.
X1ug.mL..241vsDMSO..6hA
X10ug.mL..241vsDMSO..6h
X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046.
X.241..1ug.mL..DMSO..12h..1
X.241..10ug.mL..DMSO..12h..1
X.241..10ug.mL..DMSO..12h..2
DIPED.10ug.mL.vs.DMSO.12h.2
DIPED..50ug.mL..DMSO..12h
DIPED.50ug.mL.vs.DMSO.12h.1
DIPED.50ug.mL.vs.DMSO.12h.2
DIPED..100ug.mL..DMSO..12h..1
Mtm.0.2ug.mL.vs.ctrl.12h.1.y
X0.1mg.mL.TriclosanvsEtOH..6h
X0.1mg.mL.TriclosanvsEtOH..6hA
X0.1mg.mLTriclosanvsEtOH.6hB
X0.1mg.mLTriclosanvsEtOH.6hC
X0.15mg.mL.TricvsEtOH..6hA
X10ug.mL.TriclosanvsDMSO..6h
X10ug.mL.TriclosanvsDMSO..6hA
X50ug.mL.Triclosan.DMSO..6h
X50ug.mL.Triclosan.EtOH
X50ug.mL.TriclosanvsEtOH..6hA
X100ug.mL.TriclosanvsEtOH..6h
X100ug.mL.TriclosanvsEtOH..6hA
X10ug.mL.EMBvsDMSO..6h
X10ug.mL.EMBvsDMSO..6hA
EMB..10ug.mL..DMSO..12h
EMB.10ug.mL.vs.DMSO.12h.1
EMB.10ug.mL.vs.DMSO.12h.4
X20ug.mL.ethambutol.DMSO
X0.2mg.mL.AmpvsEtOH..6h
X0.2mg.mL.AmpvsEtOH..6hA
X0.32ug.mL.CervsEtOH..6h
X0.32ug.mL.CervsEtOH..6hA
X0.5ug.mL.CervsEtOH..6h
X0.5ug.mL.CervsEtOH..6hA
X0.5ug.mL.CeruleninvsDMSO..6hA
X0.5ug.mL.CeruleninvsDMSO..6hB
X20ug.mL.Cephalexin.Ctrl..6h..1
X20ug.mL.Cephalexin.Ctrl..6h..2
X100ug.mL.Cephalexin.Ctrl..6h
X100ug.mL.Cphx.DMSO..6h
X100ug.mLCephalexinvsEtOH.6h
X100ug.mLCephalexinvsEtOH.6hA
X12ug.mLEthionamidevsEtOH.6h
X12ug.mLEthionamidevsEtOH.6hA
X40ug.mL.EtavsEtOH..6h
X0.2ug.mL.INH.EtOH..6h
X0.4ug.mL.INHvsEtOH..6h
X0.4ug.mL.INHvsEtOH..6hA
X130ug.mL.TLMvsDMSO..6h
X130ug.mL.TLMvsDMSO..6hA
X0.13mg.mL.TLMvsDMSO..6hA
X0.2mg.mL.TLMvsEtOH..6h
X0.2mg.mL.TLMvsEtOH..6hA
X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1
X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.2
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1
X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
X130ug.ml.TLM.vs.DMSO.6hrs.rep.2
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
MTB1254.3524.1._INH_20MIN
MTB1254.3524.2._INH_20MIN
MTB1254_INH_20MIN
X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
X10ug.ml.Ethambutol.vs.DMSO.12hrs.3
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1

Column members cluster 552f93a7b744335b89d795e3 Species (TODO)

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
High.iron.wt.vs.low.iron.wt.1b
High.iron.wt.vs.low.iron.wt.2a
High.iron.wt.vs.low.iron.wt.2b
High.iron.wt.vs.low.iron.wt.3a
High.iron.wt.vs.low.iron.wt.3b
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.4
H37Rv.hypoxia.2hr.rep.5
H37Rv.hypoxia.2hr.rep.6
NRP.Day6..2
NRP.Day8..1
NRP.Day8..2
NRP.Day8..3
NRP.Day10..2
NRP.Day10..3
NRP.Day12..1
NRP.Day12..2
NRP.Day12..3
NRP.Day14..2
NRP.Day14..3
NRP.Day14..4
NRP.Day14..5
NRP.Day14..6
NRP.Day14..8
NRP.Day14..9
NRP.Day20..2
NRP.Day30..1
Mtm.0.2ug.mL.vs.ctrl.8h.1.x
Mtm.0.2ug.mL.vs.ctrl.8h.2.x
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.4hr.rep.5
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.8hr.rep.3
H37Rv.hypoxia.12hr.rep.1
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.6
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.9
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.4
H37Rv.hypoxia.4.day.rep.5
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.1
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.5
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG.ISB.3.0C_N30A02cy.3
SG2.A2_N02A03c3
SG2.A3_N02A04c3
SG2.D3_N02A04c5
SG2.D7_N02A06c5
SG2.A7_N02A06c3
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG2.D8_N02A07c5
SG7.T8A_N11A05cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG2.B9_N02A12c5
SG2.D9_N02A08c5
SG12.C120_N32A12cy.5
SG.ISB.3.12A_N30A06cy.5
SG.ISB.3.12C_N30A07cy.5
X10ug.mL..59.DMSO..6h
X10ug.mL..59vsDMSO..6h
X1ug.mL..109vsDMSO..6h
X1ug.mL..109vsDMSO..6hA
X10ug.mL..109.DMSO..6h
X10ug.mL..109vsDMSO..6hA
X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050.
X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052.
X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053.
X.109..10ug.mL..DMSO..12h..replicate.2..GEO.acc..GSM28054.
X1ug.mL..241vsDMSO..6hA
X10ug.mL..241vsDMSO..6h
X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046.
X.241..1ug.mL..DMSO..12h..1
X.241..10ug.mL..DMSO..12h..1
X.241..10ug.mL..DMSO..12h..2
DIPED.10ug.mL.vs.DMSO.12h.2
DIPED..50ug.mL..DMSO..12h
DIPED.50ug.mL.vs.DMSO.12h.1
DIPED.50ug.mL.vs.DMSO.12h.2
DIPED..100ug.mL..DMSO..12h..1
Mtm.0.2ug.mL.vs.ctrl.12h.1.y
X0.1mg.mL.TriclosanvsEtOH..6h
X0.1mg.mL.TriclosanvsEtOH..6hA
X0.1mg.mLTriclosanvsEtOH.6hB
X0.1mg.mLTriclosanvsEtOH.6hC
X0.15mg.mL.TricvsEtOH..6hA
X10ug.mL.TriclosanvsDMSO..6h
X10ug.mL.TriclosanvsDMSO..6hA
X50ug.mL.Triclosan.DMSO..6h
X50ug.mL.Triclosan.EtOH
X50ug.mL.TriclosanvsEtOH..6hA
X100ug.mL.TriclosanvsEtOH..6h
X100ug.mL.TriclosanvsEtOH..6hA
X10ug.mL.EMBvsDMSO..6h
X10ug.mL.EMBvsDMSO..6hA
EMB..10ug.mL..DMSO..12h
EMB.10ug.mL.vs.DMSO.12h.1
EMB.10ug.mL.vs.DMSO.12h.4
X20ug.mL.ethambutol.DMSO
X0.2mg.mL.AmpvsEtOH..6h
X0.2mg.mL.AmpvsEtOH..6hA
X0.32ug.mL.CervsEtOH..6h
X0.32ug.mL.CervsEtOH..6hA
X0.5ug.mL.CervsEtOH..6h
X0.5ug.mL.CervsEtOH..6hA
X0.5ug.mL.CeruleninvsDMSO..6hA
X0.5ug.mL.CeruleninvsDMSO..6hB
X20ug.mL.Cephalexin.Ctrl..6h..1
X20ug.mL.Cephalexin.Ctrl..6h..2
X100ug.mL.Cephalexin.Ctrl..6h
X100ug.mL.Cphx.DMSO..6h
X100ug.mLCephalexinvsEtOH.6h
X100ug.mLCephalexinvsEtOH.6hA
X12ug.mLEthionamidevsEtOH.6h
X12ug.mLEthionamidevsEtOH.6hA
X40ug.mL.EtavsEtOH..6h
X0.2ug.mL.INH.EtOH..6h
X0.4ug.mL.INHvsEtOH..6h
X0.4ug.mL.INHvsEtOH..6hA
X130ug.mL.TLMvsDMSO..6h
X130ug.mL.TLMvsDMSO..6hA
X0.13mg.mL.TLMvsDMSO..6hA
X0.2mg.mL.TLMvsEtOH..6h
X0.2mg.mL.TLMvsEtOH..6hA
X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1
X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.2
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1
X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
X130ug.ml.TLM.vs.DMSO.6hrs.rep.2
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
MTB1254.3524.1._INH_20MIN
MTB1254.3524.2._INH_20MIN
MTB1254_INH_20MIN
X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs
X10ug.ml.Ethambutol.vs.DMSO.12hrs.3
X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1