Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0001399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.72277193712require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.72807197456include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.93207718216get_template_part( ).../page.php:28
60.93207718792locate_template( ).../general-template.php:206
70.93207718920load_template( ).../template.php:720
80.93207719232require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.93337736408the_content( ).../content-page.php:22
100.93367736656apply_filters( ).../post-template.php:256
110.93367737056WP_Hook->apply_filters( ).../plugin.php:205
120.93527742584do_shortcode( ).../class-wp-hook.php:310
130.93537748640preg_replace_callback ( ).../shortcodes.php:273
143.77067757560do_shortcode_tag( ).../shortcodes.php:273
153.77067758032bicluster_genes_shortcode( ).../shortcodes.php:433
163.77077758536file_get_contents ( ).../short_codes.php:15
( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0001399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.72277193712require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.72807197456include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.93207718216get_template_part( ).../page.php:28
60.93207718792locate_template( ).../general-template.php:206
70.93207718920load_template( ).../template.php:720
80.93207719232require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.93337736408the_content( ).../content-page.php:22
100.93367736656apply_filters( ).../post-template.php:256
110.93367737056WP_Hook->apply_filters( ).../plugin.php:205
120.93527742584do_shortcode( ).../class-wp-hook.php:310
130.93537748640preg_replace_callback ( ).../shortcodes.php:273
143.77067757560do_shortcode_tag( ).../shortcodes.php:273
153.77067758032bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0001399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.72277193712require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.72807197456include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.93207718216get_template_part( ).../page.php:28
60.93207718792locate_template( ).../general-template.php:206
70.93207718920load_template( ).../template.php:720
80.93207719232require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.93337736408the_content( ).../content-page.php:22
100.93367736656apply_filters( ).../post-template.php:256
110.93367737056WP_Hook->apply_filters( ).../plugin.php:205
120.93527742584do_shortcode( ).../class-wp-hook.php:310
130.93537748640preg_replace_callback ( ).../shortcodes.php:273
143.77067757560do_shortcode_tag( ).../shortcodes.php:273
153.77067758032bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0001399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.72277193712require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.72807197456include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.93207718216get_template_part( ).../page.php:28
60.93207718792locate_template( ).../general-template.php:206
70.93207718920load_template( ).../template.php:720
80.93207719232require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.93337736408the_content( ).../content-page.php:22
100.93367736656apply_filters( ).../post-template.php:256
110.93367737056WP_Hook->apply_filters( ).../plugin.php:205
120.93527742584do_shortcode( ).../class-wp-hook.php:310
130.93537748640preg_replace_callback ( ).../shortcodes.php:273
143.77067757560do_shortcode_tag( ).../shortcodes.php:273
153.77067758032bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f8a84b744335b89d763cc
# Conditions: 165
# Genes: 17
Residual: 0.39208723002034

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
    • High.iron.wt.vs.low.iron.wt.1b
    • High.iron.wt.vs.low.iron.wt.2a
    • High.iron.wt.vs.low.iron.wt.3a
    • High.iron.wt.vs.low.iron.wt.3b
    • H37Rv.hypoxia.2hr.rep.1
    • H37Rv.hypoxia.2hr.rep.2
    • H37Rv.hypoxia.2hr.rep.3
    • H37Rv.hypoxia.2hr.rep.5
    • H37Rv.hypoxia.2hr.rep.6
    • NRP.Day6..1
    • NRP.Day6..3
    • NRP.Day8..1
    • NRP.Day8..2
    • NRP.Day8..3
    • NRP.Day10..1
    • NRP.Day10..3
    • NRP.Day12..1
    • NRP.Day12..2
    • NRP.Day12..3
    • NRP.Day14..1
    • NRP.Day14..4
    • NRP.Day14..5
    • NRP.Day14..7
    • NRP.Day20..1
    • NRP.Day30..1
    • pH4.8vspH6.8..7h.
    • pH4.8vspH6.8..11h.
    • pH5.2vspH6.8..2h.
    • pH5.6vspH6.8..2h.
    • pH5.6vspH6.8..4h.B
    • pH5.6vspH6.8..7h.
    • pH5.6vspH6.8..11h.
    • H37Rv.hypoxia.4hr.rep.1
    • H37Rv.hypoxia.4hr.rep.2
    • H37Rv.hypoxia.4hr.rep.3
    • H37Rv.hypoxia.4hr.rep.4
    • H37Rv.hypoxia.4hr.rep.5
    • H37Rv.hypoxia.4hr.rep.7
    • H37Rv.hypoxia.8hr.rep.1
    • H37Rv.hypoxia.8hr.rep.2
    • H37Rv.hypoxia.8hr.rep.3
    • H37Rv.hypoxia.12hr.rep.3
    • H37Rv.hypoxia.1.day.rep.3
    • H37Rv.hypoxia.1.day.rep.4
    • H37Rv.hypoxia.1.day.rep.5
    • H37Rv.hypoxia.1.day.rep.6
    • H37Rv.hypoxia.1.day.rep.10
    • H37Rv.hypoxia.4.day.rep.1
    • H37Rv.hypoxia.4.day.rep.2
    • H37Rv.hypoxia.4.day.rep.3
    • H37Rv.hypoxia.4.day.rep.4
    • H37Rv.hypoxia.4.day.rep.6
    • H37Rv.hypoxia.4.day.rep.7
    • H37Rv.hypoxia.7.day.rep.1
    • H37Rv.hypoxia.7.day.rep.3
    • H37Rv.hypoxia.7.day.rep.4
    • H37Rv.hypoxia.7.day.rep.5
    • H37Rv.hypoxia.7.day.rep.6
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
    • Starvation_1254_OA50_12h_02
    • Starvation_1254_OA50_12h_03
    • Starvation_1254_OA50_12h_04
    • Starvation_1254_OA50_24h_02
    • Starvation_1254_OA50_24h_03
    • Starvation_1254_OA50_24h_04
    • Starvation_1254_OA50_3d_02
    • Starvation_1254_OA50_3d_03
    • Starvation_1254_OA50_3d_04
    • Starvation_1254_OA50_5d_02
    • Starvation_1254_OA50_5d_03
    • Starvation_1254_OA50_5d_04
    • Starvation_1254_PA50_24h_03
    • Starvation_1254_PA50_24h_04
    • Starvation_OA50_24h_03
    • Starvation_OA50_6h_03
    • Starvation_OA50_6h_04
    • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Mtb.response.to.pH.5.5..6.replicates.
    • M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
    • MTB.in.Wild.type.macrophages.for.4hrs
    • MTB.in.Wild.type.macrophages.for.24hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
    • MTB.in.Wild.type.macrophages...IFNg.for.24hrs
    • Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
    • Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
    • Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
    • Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
    • Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
    • Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
    • Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
    • Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
    • SG6.G0_N5A02cy.5
    • SG7.AT0_N11A01cy.5
    • SG7.DT0_N11A04cy.5
    • SG8.B.Day.0.pre_N37A12cy.3
    • SG8.C.Day.0.post_N37A10cy.5
    • SG8.C.Day.1_N37A11cy.5
    • SG8.C.Day.1_N27A09cy.3
    • SG8.D.Day.1_N27A12cy.3
    • SG8.B.Day.1_N37A05cy.5
    • SG7.BT1_N11A06cy.5
    • SG7.AT1_N11A05cy.5
    • SG6.D1_N5A05cy.5
    • SG6.C1_N5A04cy.5
    • SG8.C.Day.2_N37A12cy.5
    • SG8.B.Day.2_N37A06cy.5
    • SG8.A.Day.3_N37A09cy.3
    • SG8.B.Day.3_N37A07cy.5
    • SG2.B3_N02A12c3
    • SG2.A5_N02A05c3
    • SG6_B7_N7A12cy.5
    • SG7.T7B_N11A09cy.5
    • SG7.T7C_N11A10cy.5
    • SG7.T7D_N11A11cy.5
    • SG12.C0_N32A05cy.5
    • SG12.B0_N32A09cy.3
    • SG12.A0_N32A01cy.3
    • SG12.B1_N32A10cy.3
    • SG12.C1_N32A06cy.5
    • SG12.B2_N32A11cy.3
    • SG12.B4_N32A12cy.3
    • SG12.C4_N32A08cy.5
    • SG2.A8_N02A07c3
    • SG6.D8_N5A09cy.5
    • SG7.T8C_N11A07cy.3
    • SG7.T8D_N11A08cy.3
    • SG2.A9_N02A08c3
    • SG2.B9_N02A12c5
    • SG6.C11_N5A12cy.5
    • SG6.B11_N5A11cy.5
    • SG6.A11_N5A10cy.5
    • SG7.T12C_N11A11cy.3
    • SG7.T12B_N11A10cy.3
    • SG12.C120_N32A12cy.5
    • SG12.B120_N32A04cy.5
    • SG6.C14_N8A12cy.5
    • SG6D.T14_N11A04cy.3
    • WT_140mM_NaCl_Rep1
    • WT_140mM_NaCl_Rep4