Bicluster


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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11167193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11427197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17877718136get_template_part( ).../page.php:28
60.17877718712locate_template( ).../general-template.php:206
70.17887718840load_template( ).../template.php:720
80.17887719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17957736328the_content( ).../content-page.php:22
100.17977736576apply_filters( ).../post-template.php:256
110.17977736976WP_Hook->apply_filters( ).../plugin.php:205
120.18067742504do_shortcode( ).../class-wp-hook.php:310
130.18077748560preg_replace_callback ( ).../shortcodes.php:273
141.13797753384do_shortcode_tag( ).../shortcodes.php:273
151.13797753856bicluster_genes_shortcode( ).../shortcodes.php:433
161.13807754360file_get_contents ( ).../short_codes.php:15
( ! ) Notice: Trying to get property 'genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 16
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11167193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11427197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17877718136get_template_part( ).../page.php:28
60.17877718712locate_template( ).../general-template.php:206
70.17887718840load_template( ).../template.php:720
80.17887719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17957736328the_content( ).../content-page.php:22
100.17977736576apply_filters( ).../post-template.php:256
110.17977736976WP_Hook->apply_filters( ).../plugin.php:205
120.18067742504do_shortcode( ).../class-wp-hook.php:310
130.18077748560preg_replace_callback ( ).../shortcodes.php:273
141.13797753384do_shortcode_tag( ).../shortcodes.php:273
151.13797753856bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 18
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11167193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11427197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17877718136get_template_part( ).../page.php:28
60.17877718712locate_template( ).../general-template.php:206
70.17887718840load_template( ).../template.php:720
80.17887719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17957736328the_content( ).../content-page.php:22
100.17977736576apply_filters( ).../post-template.php:256
110.17977736976WP_Hook->apply_filters( ).../plugin.php:205
120.18067742504do_shortcode( ).../class-wp-hook.php:310
130.18077748560preg_replace_callback ( ).../shortcodes.php:273
141.13797753384do_shortcode_tag( ).../shortcodes.php:273
151.13797753856bicluster_genes_shortcode( ).../shortcodes.php:433
( ! ) Warning: Invalid argument supplied for foreach() in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 29
Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.11167193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.11427197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.17877718136get_template_part( ).../page.php:28
60.17877718712locate_template( ).../general-template.php:206
70.17887718840load_template( ).../template.php:720
80.17887719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.17957736328the_content( ).../content-page.php:22
100.17977736576apply_filters( ).../post-template.php:256
110.17977736976WP_Hook->apply_filters( ).../plugin.php:205
120.18067742504do_shortcode( ).../class-wp-hook.php:310
130.18077748560preg_replace_callback ( ).../shortcodes.php:273
141.13797753384do_shortcode_tag( ).../shortcodes.php:273
151.13797753856bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f35f1b744335b89d58622
# Conditions: 178
# Genes: 16
Residual: 0.36559845846203

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • NRP.Day6..1
    • NRP.Day8..3
    • NRP.Day14..9
    • NRP.Day20..2
    • Mtm.0.2ug.mL.vs.ctrl.8h.2.x
    • Mtm.0.2ug.mL.vs.ctrl.12h.1.x
    • X4mM.H2O2vsctrl..1h.
    • X4mM.H2O2vsctrl..2h.A
    • X4mM.H2O2.ctrl..2h...1
    • X4mM.H2O2.ctrl..2h...2
    • X4mM.H2O2.ctrl..4h...1
    • X4mM.H2O2.ctrl..4h...2
    • X4mM.H2O2vsctrl..4h.A
    • H2O2.4mM.vs.ctrl.8h.1
    • H2O2.4mM.vs.ctrl.12h.1
    • X20mJ.UVvsctrl..6h.
    • UV.20J.vs.ctrl.8h.1
    • UV.40J.vs.8h.2
    • UV.40J.vs.ctrl.8h.1
    • UV.40J.vs.ctrl.12h.1
    • X60J.UV.ctrl..2h.
    • UV.60J.vs.ctrl.6h.1
    • H37Rv.hypoxia.4hr.rep.5
    • H37Rv.hypoxia.4hr.rep.6
    • H37Rv.hypoxia.4hr.rep.7
    • H37Rv.hypoxia.8hr.rep.3
    • H37Rv.hypoxia.1.day.rep.2
    • H37Rv.hypoxia.1.day.rep.4
    • H37Rv.hypoxia.1.day.rep.5
    • H37Rv.hypoxia.1.day.rep.7
    • H37Rv.hypoxia.1.day.rep.10
    • H37Rv.hypoxia.4.day.rep.3
    • H37Rv.hypoxia.4.day.rep.5
    • H37Rv.hypoxia.7.day.rep.2
    • H37Rv.hypoxia.7.day.rep.3
    • H37Rv.hypoxia.7.day.rep.5
    • H37Rv.hypoxia.7.day.rep.6
    • H37Rv.hypoxia.7.day.rep.7
    • H37Rv.diamide.1h.rep.5
    • H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
    • H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
    • H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
    • CHP_25uM_2h_01
    • Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
    • BCG.2hr.phagosomal.profile
    • M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
    • MTB.in.Wild.type.macrophages...IFNg.for.4hrs
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.1
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.2
    • MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.1
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.5
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.3
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.4
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
    • MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
    • Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
    • Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
    • Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
    • Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
    • Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
    • Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
    • SG2.A0_N02A01c3
    • SG2.B0_N02A09c3
    • SG2.D0_N02A01c5
    • SG6.G0_N5A02cy.5
    • SG6.H0_N5A03cy.5
    • SG7.AT0_N11A01cy.5
    • SG7.BT0_N11A02cy.5
    • SG7.CT0_N11A03cy.5
    • SG7.DT0_N11A04cy.5
    • SG8.A.Day.0.pre_fix_N37A04cy.5
    • SG8.C.Day.0.post_N27A08cy.3
    • SG8.C.Day.0.pre_N27A07cy.3
    • SG8.D.Day.0.pre_N27A10cy.3
    • SG8.C.Day.0.post_N37A10cy.5
    • SG8.D.Day.0.post_N27A11cy.3
    • SG.ISB.3.0A_N30A01cy.3
    • SG.ISB.3.0B_N30A01cy.5
    • SG8.C.Day.1_N37A11cy.5
    • SG8.C.Day.1_N27A09cy.3
    • SG8.D.Day.1_N27A12cy.3
    • SG7.DT1_N11A08cy.5
    • SG7.CT1_N11A07cy.5
    • SG6.C1_N5A04cy.5
    • SG2.D1_N02A02c5
    • SG2.A2_N02A03c3
    • SG2.B2_N02A11c3
    • SG2.D2_N02A03c5
    • SG2.A3_N02A04c3
    • SG2.B3_N02A12c3
    • SG2.D3_N02A04c5
    • SG8.A.Day.5_N37A10cy.3
    • SG8.B.Day.5_N37A08cy.5
    • SG2.A5_N02A05c3
    • SG2.B5_N02A09c5
    • SG2.D5_N02A05c5
    • SG2.D7_N02A06c5
    • SG2.B7_N02A10c5
    • SG6C.T7_N11A01cy.3
    • SG6_B7_N7A12cy.5
    • SG6_A7_N7A12cy.3
    • SG7.T7B_N11A09cy.5
    • SG7.T7C_N11A10cy.5
    • SG7.T7D_N11A11cy.5
    • SG8.B.Day.7_N37A09cy.5
    • SG8.A.Day.7_N37A11cy.3
    • SG.ISB.3.7B_N30A03cy.3
    • SG.ISB.3.7C_N30A03cy.5
    • SG.ISB.3.7D_N30A04cy.3
    • SG12.C0_N32A05cy.5
    • SG12.B0_N32A09cy.3
    • SG12.A0_N32A01cy.3
    • SG12.B2_N32A11cy.3
    • SG12.C2_N32A07cy.5
    • SG12.B4_N32A12cy.3
    • SG12.B24_N32A03cy.5
    • SG2.B8_N02A11c5
    • SG2.D8_N02A07c5
    • SG6.D8_N5A09cy.5
    • SG6.C8_N5A08cy.5
    • SG6.B8_N5A07cy.5
    • SG6.A8_N5A06cy.5
    • SG7.T8C_N11A07cy.3
    • SG7.T8B_N11A06cy.3
    • SG7.T8A_N11A05cy.3
    • SG.ISB.3.8A_N30A04cy.5
    • SG.ISB.3.8C_N30A05cy.5
    • SG.ISB.3.8D_N30A06cy.3
    • SG2.A9_N02A08c3
    • SG2.B9_N02A12c5
    • SG2.D9_N02A08c5
    • SG6.C11_N5A12cy.5
    • SG6.A11_N5A10cy.5
    • SG7.T12C_N11A11cy.3
    • SG7.T12A_N11A09cy.3
    • SG12.A120_N32A08cy.3
    • SG.ISB.3.12A_N30A06cy.5
    • SG.ISB.3.12C_N30A07cy.5
    • A00470_Q2_t60_diamide
    • A00470_Q3_t90_diamide