Bicluster – MTB EGRIN 2.0

( ! ) Warning: file_get_contents(https://mtb-egrin2.systemsbiology.net/api/api/v1.0.0/bicluster_info/552f27d5b744335b89d528b0): failed to open stream: HTTP request failed! HTTP/1.1 500 Internal Server Error in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 666
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0001	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1546	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1572	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2193	7718136	get_template_part( )	.../page.php:28
6	0.2193	7718712	locate_template( )	.../general-template.php:206
7	0.2193	7718840	load_template( )	.../template.php:720
8	0.2193	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2201	7736328	the_content( )	.../content-page.php:22
10	0.2202	7736576	apply_filters( )	.../post-template.php:256
11	0.2202	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2211	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.2212	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2212	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2212	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433
16	0.2213	7749384	file_get_contents ( )	.../short_codes.php:666

( ! ) Notice: Trying to get property 'bicluster' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 667
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0001	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1546	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1572	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2193	7718136	get_template_part( )	.../page.php:28
6	0.2193	7718712	locate_template( )	.../general-template.php:206
7	0.2193	7718840	load_template( )	.../template.php:720
8	0.2193	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2201	7736328	the_content( )	.../content-page.php:22
10	0.2202	7736576	apply_filters( )	.../post-template.php:256
11	0.2202	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2211	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.2212	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2212	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2212	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'id' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 669
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0001	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1546	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1572	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2193	7718136	get_template_part( )	.../page.php:28
6	0.2193	7718712	locate_template( )	.../general-template.php:206
7	0.2193	7718840	load_template( )	.../template.php:720
8	0.2193	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2201	7736328	the_content( )	.../content-page.php:22
10	0.2202	7736576	apply_filters( )	.../post-template.php:256
11	0.2202	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2211	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.2212	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2212	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2212	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_conditions' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 670
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0001	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1546	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1572	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2193	7718136	get_template_part( )	.../page.php:28
6	0.2193	7718712	locate_template( )	.../general-template.php:206
7	0.2193	7718840	load_template( )	.../template.php:720
8	0.2193	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2201	7736328	the_content( )	.../content-page.php:22
10	0.2202	7736576	apply_filters( )	.../post-template.php:256
11	0.2202	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2211	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.2212	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2212	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2212	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'num_genes' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 671
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0001	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1546	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1572	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2193	7718136	get_template_part( )	.../page.php:28
6	0.2193	7718712	locate_template( )	.../general-template.php:206
7	0.2193	7718840	load_template( )	.../template.php:720
8	0.2193	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2201	7736328	the_content( )	.../content-page.php:22
10	0.2202	7736576	apply_filters( )	.../post-template.php:256
11	0.2202	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2211	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.2212	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2212	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2212	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

( ! ) Notice: Trying to get property 'residual' of non-object in /local/apache-stuff/mtb_egrin2/wp-content/plugins/wp-biclusters/short_codes.php on line 672
Call Stack
#	Time	Memory	Function	Location
1	0.0000	398720	{main}( )	.../index.php:0
2	0.0001	399000	require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' )	.../index.php:17
3	0.1546	7193632	require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' )	.../wp-blog-header.php:19
4	0.1572	7197376	include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' )	.../template-loader.php:106
5	0.2193	7718136	get_template_part( )	.../page.php:28
6	0.2193	7718712	locate_template( )	.../general-template.php:206
7	0.2193	7718840	load_template( )	.../template.php:720
8	0.2193	7719152	require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' )	.../template.php:787
9	0.2201	7736328	the_content( )	.../content-page.php:22
10	0.2202	7736576	apply_filters( )	.../post-template.php:256
11	0.2202	7736976	WP_Hook->apply_filters( )	.../plugin.php:205
12	0.2211	7742504	do_shortcode( )	.../class-wp-hook.php:310
13	0.2212	7748560	preg_replace_callback ( )	.../shortcodes.php:273
14	0.2212	7749184	do_shortcode_tag( )	.../shortcodes.php:273
15	0.2212	7749184	bicluster_info_shortcode( )	.../shortcodes.php:433

ID:
# Conditions:
# Genes:
Residual:

Bicluster Motifs

Bicluster Genes

Rv0795
Rv0796
Rv1370c
Rv1756c
Rv1757c
Rv1763
Rv2167c
Rv2168c
Rv2278
Rv2354
Rv2355
Rv2479c
Rv2480c
Rv2648
Rv2649
Rv2815c
Rv3184
Rv3186
Rv3380c
Rv3381c
Rv3474

Bicluster Conditions

H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.4
NRP.Day6..3
NRP.Day14..3
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..2h.A
X4mM.H2O2.ctrl..2h...1
X4mM.H2O2.ctrl..4h...2
X4mM.H2O2vsctrl..4h.
X4mM.H2O2vsctrl..4h.A
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.4hr.rep.6
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.5
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
H37Rv.diamide.1h.rep.1
H37Rv.diamide.1h.rep.3
H37Rv.diamide.1h.rep.6
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
CHP_25uM_1h_01
CHP_25uM_2h_01
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.H0_N5A03cy.5
SG6_B0_N7A10cy.5
SG7.BT0_N11A02cy.5
SG7.DT0_N11A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG8.C.Day.1_N37A11cy.5
SG8.C.Day.1_N27A09cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.AT1_N11A05cy.5
SG6_A1_N7A11cy.3
SG6.C1_N5A04cy.5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.A.Day.2_N37A08cy.3
SG2.A2_N02A03c3
SG2.B2_N02A11c3
SG8.A.Day.3_N37A09cy.3
SG8.B.Day.3_N37A07cy.5
SG2.A3_N02A04c3
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG8.B.Day.7_N37A09cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.B0_N32A09cy.3
SG12.A0_N32A01cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.A4_N32A04cy.3
SG12.B4_N32A12cy.3
SG12.A6_N32A05cy.3
SG12.C6_N32A09cy.5
SG12.A8_N32A06cy.3
SG12.C8_N32A10cy.5
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG6D.T8_N11A03cy.3
SG6.C8_N5A08cy.5
SG7.T8B_N11A06cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG2.D9_N02A08c5
SG6.D11_N8A09cy.5
SG6.B11_N5A11cy.5
SG7.T12D_N11A12cy.3
SG7.T12A_N11A09cy.3
SG12.C120_N32A12cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12C_N30A07cy.5
SG6.A14_N8A10cy.5
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5
A00437_Q1_t30_diamide

Column members cluster 552f27d5b744335b89d528b0 Species (TODO)

H37Rv.hypoxia.2hr.rep.3
H37Rv.hypoxia.2hr.rep.4
NRP.Day6..3
NRP.Day14..3
X4mM.H2O2vsctrl..2h.
X4mM.H2O2vsctrl..2h.A
X4mM.H2O2.ctrl..2h...1
X4mM.H2O2.ctrl..4h...2
X4mM.H2O2vsctrl..4h.
X4mM.H2O2vsctrl..4h.A
H37Rv.hypoxia.4hr.rep.2
H37Rv.hypoxia.4hr.rep.3
H37Rv.hypoxia.4hr.rep.4
H37Rv.hypoxia.4hr.rep.6
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.1
H37Rv.hypoxia.8hr.rep.2
H37Rv.hypoxia.1.day.rep.2
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.2
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.4.day.rep.6
H37Rv.hypoxia.4.day.rep.7
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.5
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
H37Rv.diamide.1h.rep.1
H37Rv.diamide.1h.rep.3
H37Rv.diamide.1h.rep.6
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4
H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6
CHP_25uM_1h_01
CHP_25uM_2h_01
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.0.5.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.2
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.4
MTB.strain.1254.Ctrl.vs.50.0.mM.H202.40min.rep.6
SG2.A0_N02A01c3
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.H0_N5A03cy.5
SG6_B0_N7A10cy.5
SG7.BT0_N11A02cy.5
SG7.DT0_N11A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG.ISB.3.0A_N30A01cy.3
SG.ISB.3.0B_N30A01cy.5
SG8.C.Day.1_N37A11cy.5
SG8.C.Day.1_N27A09cy.3
SG8.B.Day.1_N37A05cy.5
SG8.A.Day.1_fix_N37A03cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.AT1_N11A05cy.5
SG6_A1_N7A11cy.3
SG6.C1_N5A04cy.5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.A.Day.2_N37A08cy.3
SG2.A2_N02A03c3
SG2.B2_N02A11c3
SG8.A.Day.3_N37A09cy.3
SG8.B.Day.3_N37A07cy.5
SG2.A3_N02A04c3
SG8.A.Day.5_N37A10cy.3
SG8.B.Day.5_N37A08cy.5
SG2.A5_N02A05c3
SG6D.T7_N11A02cy.3
SG6C.T7_N11A01cy.3
SG6_B7_N7A12cy.5
SG8.B.Day.7_N37A09cy.5
SG8.A.Day.7_N37A11cy.3
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG.ISB.3.7D_N30A04cy.3
SG12.B0_N32A09cy.3
SG12.A0_N32A01cy.3
SG12.A1_N32A02cy.3
SG12.B1_N32A10cy.3
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.B2_N32A11cy.3
SG12.C2_N32A07cy.5
SG12.A4_N32A04cy.3
SG12.B4_N32A12cy.3
SG12.A6_N32A05cy.3
SG12.C6_N32A09cy.5
SG12.A8_N32A06cy.3
SG12.C8_N32A10cy.5
SG2.A8_N02A07c3
SG2.B8_N02A11c5
SG6D.T8_N11A03cy.3
SG6.C8_N5A08cy.5
SG7.T8B_N11A06cy.3
SG7.T8A_N11A05cy.3
SG7.T8D_N11A08cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG2.A9_N02A08c3
SG2.B9_N02A12c5
SG2.D9_N02A08c5
SG6.D11_N8A09cy.5
SG6.B11_N5A11cy.5
SG7.T12D_N11A12cy.3
SG7.T12A_N11A09cy.3
SG12.C120_N32A12cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12C_N30A07cy.5
SG6.A14_N8A10cy.5
SG6.B14_N8A11cy.5
SG6.C14_N8A12cy.5
A00437_Q1_t30_diamide