Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0254c
• Rv0367c
• Rv0381c
• Rv0477
• Rv0478
• Rv0619
• Rv0742
• Rv1003
• Rv1104
• Rv2414c
• Rv2650c
• Rv2727c
• Rv2897c
• Rv2898c
• Rv2923c
• Rv3344c
• Rv3367
• Rv3368c
• Rv3388
• Rv3511
• Rv3602c
• Rv3654c
• Rv3658c
• Rv3659c
• Rv3698

Bicluster Conditions

• H37Rv..7H9.roll.replicate.2.x
• H37Rv..7H9.shake.replicate.3
• H37Rv..7H9.shake.replicate.4
• H37Rv..Dubos.media.replicate.1
• H37Rv..Sauton.s.media.replicate.2
• H37Rv..Sauton.s.media.replicate.4
• H37Rv..Youman.media.replicate.4
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4.x
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.5.x
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.x
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.3
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.4
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.3
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.4
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.x
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.x
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4.x
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.1
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.3
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1.x
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3.x
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4.x
• MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.x
• H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2
• H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
• MTB1254.Day.0.rep.1
• MTB1254.Day.0.rep.3
• MTB1254.vs..MTB1254.rep2
• MTB1254.vs..MTB1254.rep5
• MTB1254.vs..MTB1254.rep6
• H37Rv.Day.0.rep.2
• H37Rv.Day.0.rep.3
• H37Rv.Day6.1
• H37Rv.Day6.2
• H37Rv.Day8.2
• WT.t.6h.WT.t.0h..1
• WT.t.6h.WT.t.0h..2
• WT.t.0h.WT.t.6h..1
• X0.02mM.GSNOvsDMSO..6h
• X0.1mM.GSNOvsDMSO..4h
• X0.1mM.GSNOvsDMSO..6h.A
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
• H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
• CDC1551.Ctrl.vs.H37Rv.rep.1
• CDC1551.Ctrl.vs.H37Rv.rep.2
• CDC1551.Ctrl.vs.H37Rv.rep.3
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1
• CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.in.Wild.type.macrophages.for.24hrs
• MTB.in.Wild.type.macrophages.for.48hrs
• MTB.in.Wild.type.macrophages...IFNg.for.4hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.48hrs
• MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4.y
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1.y
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.5.y
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6.y
• MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7.y
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1.y
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.y
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4.y
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.1
• MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.2
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1.y
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2.y
• MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4.y
• MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.y
• MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.3
• MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.4
• MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.5
• Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
• Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
• Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
• Russell_Lab_Spotted_Oligos_1.6..14.day.resting.macrophage.infection.Day.4..rep.2..Russell_Lab_Spotted_Oligos_1.6..
• Russell_Lab_Spotted_Oligos_1.7..14.day.resting.macrophage.infection.Day.6..rep.1..Russell_Lab_Spotted_Oligos_1.7..
• Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
• Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
• Russell_Lab_Spotted_Oligos_1.10.14.day.resting.macrophage.infection.Day.8..rep.2..Russell_Lab_Spotted_Oligos_1.10.
• Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
• Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
• Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
• Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
• Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
• Russell_Lab_Spotted_Oligos_1.16.14.day.resting.macrophage.infection.Day.14..rep.2..Russell_Lab_Spotted_Oligos_1.16.
• SS_A1_RV.1
• SS_A1_RV.2
• SS_A1_RV.3
• Rif.0.5ug.mL.vsDMSO.2.5h
• Rif.0.5ug.mL.vsDMSO.2.5hA
• Rif.5ug.mL.vsDMSO.2.5hA
• X0.1ug.mL.RifpvsEtOH..6hA