Bicluster


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10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.24397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.24867197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.35847718136get_template_part( ).../page.php:28
60.35847718712locate_template( ).../general-template.php:206
70.35847718840load_template( ).../template.php:720
80.35847719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.35977736328the_content( ).../content-page.php:22
100.35997736576apply_filters( ).../post-template.php:256
110.36007736976WP_Hook->apply_filters( ).../plugin.php:205
120.36157742504do_shortcode( ).../class-wp-hook.php:310
130.36167748560preg_replace_callback ( ).../shortcodes.php:273
141.92687749520do_shortcode_tag( ).../shortcodes.php:273
151.92687749520bicluster_motifs_shortcode( ).../shortcodes.php:433
161.92697749648file_get_contents ( ).../short_codes.php:74

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#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.24397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.24867197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.35847718136get_template_part( ).../page.php:28
60.35847718712locate_template( ).../general-template.php:206
70.35847718840load_template( ).../template.php:720
80.35847719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.35977736328the_content( ).../content-page.php:22
100.35997736576apply_filters( ).../post-template.php:256
110.36007736976WP_Hook->apply_filters( ).../plugin.php:205
120.36157742504do_shortcode( ).../class-wp-hook.php:310
130.36167748560preg_replace_callback ( ).../shortcodes.php:273
143.09487751560do_shortcode_tag( ).../shortcodes.php:273
153.09497752032bicluster_genes_shortcode( ).../shortcodes.php:433
163.09507752536file_get_contents ( ).../short_codes.php:15

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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.24397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.24867197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.35847718136get_template_part( ).../page.php:28
60.35847718712locate_template( ).../general-template.php:206
70.35847718840load_template( ).../template.php:720
80.35847719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.35977736328the_content( ).../content-page.php:22
100.35997736576apply_filters( ).../post-template.php:256
110.36007736976WP_Hook->apply_filters( ).../plugin.php:205
120.36157742504do_shortcode( ).../class-wp-hook.php:310
130.36167748560preg_replace_callback ( ).../shortcodes.php:273
143.09487751560do_shortcode_tag( ).../shortcodes.php:273
153.09497752032bicluster_genes_shortcode( ).../shortcodes.php:433

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#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.24397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.24867197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.35847718136get_template_part( ).../page.php:28
60.35847718712locate_template( ).../general-template.php:206
70.35847718840load_template( ).../template.php:720
80.35847719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.35977736328the_content( ).../content-page.php:22
100.35997736576apply_filters( ).../post-template.php:256
110.36007736976WP_Hook->apply_filters( ).../plugin.php:205
120.36157742504do_shortcode( ).../class-wp-hook.php:310
130.36167748560preg_replace_callback ( ).../shortcodes.php:273
143.09487751560do_shortcode_tag( ).../shortcodes.php:273
153.09497752032bicluster_genes_shortcode( ).../shortcodes.php:433

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Call Stack
#TimeMemoryFunctionLocation
10.0000398720{main}( ).../index.php:0
20.0000399000require( '/local/apache-stuff/mtb_egrin2/wp-blog-header.php' ).../index.php:17
30.24397193632require_once( '/local/apache-stuff/mtb_egrin2/wp-includes/template-loader.php' ).../wp-blog-header.php:19
40.24867197376include( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/page.php' ).../template-loader.php:106
50.35847718136get_template_part( ).../page.php:28
60.35847718712locate_template( ).../general-template.php:206
70.35847718840load_template( ).../template.php:720
80.35847719152require( '/local/apache-stuff/mtb_egrin2/wp-content/themes/twentyseventeen/template-parts/page/content-page.php' ).../template.php:787
90.35977736328the_content( ).../content-page.php:22
100.35997736576apply_filters( ).../post-template.php:256
110.36007736976WP_Hook->apply_filters( ).../plugin.php:205
120.36157742504do_shortcode( ).../class-wp-hook.php:310
130.36167748560preg_replace_callback ( ).../shortcodes.php:273
143.09487751560do_shortcode_tag( ).../shortcodes.php:273
153.09497752032bicluster_genes_shortcode( ).../shortcodes.php:433
ID: 552f01a6b744335b89d426c5
# Conditions: 199
# Genes: 21
Residual: 0.51762416000578

Bicluster Motifs

Bicluster Genes

    Bicluster Conditions

    • Strain.CDC1551..replicate.2
    • Strain.CDC1551..replicate.3
    • Strain.1006...replicate.3
    • Strain.1006...replicate.4
    • Strain.1254...replicate.3
    • Strain.1254...replicate.1
    • Strain.1843..replicate.1
    • Strain.1843...replicate.3
    • Strain.1843..replicate.4
    • Strain.3160..replicate.1
    • Strain.9700665..replicate.1
    • Strain.9700665..replicate.3
    • Strain.9700665..replicate.4
    • Strain.9800608..replicate.1
    • Strain.9800608..replicate.2
    • Strain.9800608..replicate.4
    • Strain.9802501..replicate.2
    • Strain.9802501..replicate.3
    • Strain.9802501..replicate.4
    • Strain.9802826..replicate.1
    • Strain.9802826..replicate.2
    • Strain.9802826..replicate.3
    • Strain.9802826..replicate.4
    • Strain.M3061a..replicate.1
    • Strain.M3061a..replicate.2
    • Strain.M3061a..replicate.3
    • H37Rv.Vs.M.bovis.rep1
    • H37Rv.Vs.M.bovis.rep2
    • H37Rv.0.05..SDS.exposure.for.1h.rep.1
    • H37Rv.0.05..SDS.exposure.for.1h.rep.3
    • H37Rv.0.05..SDS.exposure.for.1h.rep.4
    • H37Rv.0.05..SDS.exposure.for.1h.rep.5
    • H37Rv.0.05..SDS.exposure.for.1h.rep.6
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4.x
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3.x
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4.x
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1.x
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3.x
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4.x
    • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2
    • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3
    • CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5
    • H37Rv.vs..H37Rv.SDS.treated.rep.2
    • H37Rv.vs..H37Rv.SDS.treated.rep.3
    • H37Rv.vs..H37Rv.SDS.treated.rep.4
    • pH4.8vspH6.8..2h.
    • pH4.8vspH6.8..2h.A
    • pH4.8vspH6.8..4h.
    • pH4.8vspH6.8..4h.A
    • pH4.8vspH6.8..4h.C
    • pH4.8vspH6.8..5.5h.
    • pH4.8vspH6.8..6h.
    • pH4.8vspH6.8..11h.
    • pH5.2vspH6.8..5h.
    • pH5.2vspH6.8..5.5h.
    • pH5.2vspH6.8..11h.
    • pH5.6vspH6.8..2h.
    • pH5.6vspH6.8..4h.
    • pH5.6vspH6.8..4h.B
    • pH5.6vspH6.8..7h.
    • pH5.6vspH6.8..11h.
    • X0.02mM.GSNOvsDMSO..6h
    • X0.1mM.GSNO.DMSO..3.5h
    • X0.1mM.GSNOvsDMSO..4h
    • X0.1mM.GSNO.DMSO..6h
    • X0.1mM.GSNOvsDMSO..6h.A
    • H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
    • Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2
    • Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
    • Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
    • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
    • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3
    • H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
    • Whole.Lung.Surfactant.2hrs.rep.1
    • Whole.Lung.Surfactant.2hrs.rep.2
    • Whole.Lung.Surfactant.30min.rep.1
    • Whole.Lung.Surfactant.30min.rep.2
    • Whole.Lung.Surfactant.30min.rep.3
    • Whole.Lung.Surfactant.30min.rep.5
    • Extracted.Lung.Surfactant.30min.rep.1
    • Extracted.Lung.Surfactant.30min.rep.4
    • Purified.Surfactant.Lipids.2hrs.rep.2
    • Purified.Surfactant.Lipids.30min.rep.2
    • Purified.Human.SP.A.Coated.2hrs.rep1
    • Purified.Human.SP.A.Coated.2hrs.rep2
    • Purified.Human.SP.A.Uncoated.2hrs.rep1
    • Purified.Human.SP.A.Uncoated.2hrs.rep2
    • Purified.Human.SP.A.Uncoated.2hrs.rep3
    • Purified.Human.SP.A.Uncoated.2hrs.rep4
    • MTB1254_SDS_90MIN_02
    • MTB1254_SDS_90MIN_04
    • SDS_3h_01
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.1
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2
    • H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3
    • H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1
    • H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2
    • H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2
    • CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1
    • CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
    • Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
    • Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
    • H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
    • CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
    • BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
    • M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1.y
    • MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4.y
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3.y
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.5.y
    • MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4.y
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.5
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.6
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.7
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.1
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.3
    • MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.4hrs.rep.4
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2.y
    • MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3.y
    • MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3.y
    • MTB.strain1254.vs.MTB.strain.1254.for.DETA.NO.exp.control.rep.1
    • Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
    • Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
    • Russell_Lab_Spotted_Oligos_1.12.14.day.resting.macrophage.infection.Day.10..rep.2..Russell_Lab_Spotted_Oligos_1.12.
    • Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
    • Russell_Lab_Spotted_Oligos_1.15.14.day.resting.macrophage.infection.Day.14..rep.1..Russell_Lab_Spotted_Oligos_1.15.
    • WT_140mM_NaCl_Rep1
    • WT_140mM_NaCl_Rep3
    • hip.mutant.KL2801..biological.rep2
    • hip.mutant.KL2825..biological.rep2
    • hip.mutant.KL2849..biological.rep2
    • hip.mutant.HTS1090..biological.rep1
    • hip.mutant.HTS1090..biological.rep2
    • hip.mutant.HTS1105..biological.rep1
    • hip.mutant.HTS1105..biological.rep2
    • hip.mutant.HT1116..biological.rep1
    • hip.mutant.HT1116..biological.rep2
    • hip.mutant.HT1117..biological.rep1
    • hip.mutant.HT1117..biological.rep2
    • hip.mutant.HT1120..biological.rep2
    • hip.mutant.HT1130..biological.rep1
    • hip.mutant.HT1134..biological.rep1
    • hip.mutant.HT1137..biological.rep1
    • hip.mutant.HT1137..biological.rep2
    • hip.mutant.HT1170..biological.rep2