Bicluster – MTB EGRIN 2.0

ID: 552effb0b744335b89d41980
# Conditions: 162
# Genes: 46
Residual: 0.59536189068978

Bicluster Motifs

Bicluster Genes

Rv0180c
Rv0256c
Rv0262c
Rv0271c
Rv0334
Rv0394c
Rv0427c
Rv0437c
Rv0450c
Rv0504c
Rv0735
Rv1001
Rv1013
Rv1130
Rv1138c
Rv1214c
Rv1234
Rv1245c
Rv1318c
Rv1394c
Rv1407
Rv1456c
Rv1516c
Rv1525
Rv1568
Rv1660
Rv1743
Rv1849
Rv1878
Rv1907c
Rv2118c
Rv2234
Rv2235
Rv2284
Rv2389c
Rv2414c
Rv2521
Rv2597
Rv2820c
Rv3049c
Rv3056
Rv3242c
Rv3337
Rv3712
Rv3917c

Bicluster Conditions

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.4
NRP.Day6..3
NRP.Day10..1
NRP.Day10..3
NRP.Day12..1
NRP.Day12..2
NRP.Day12..3
NRP.Day14..7
NRP.Day14..9
NRP.Day20..2
pH4.8vspH6.8..6h.
pH4.8vspH6.8..11h.
pH5.2vspH6.8..2h.
pH5.2vspH6.8..5.5h.
pH5.2vspH6.8..11h.
pH5.6vspH6.8..4h.
pH5.6vspH6.8..4h.B
pH5.6vspH6.8..11h.
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.3
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.5
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
aceatate.induction.1
aceatate.induction.2
aceatate.induction.3
Acetate.3mM.10m.06
Acetate.3mM.2h.01
Acetate.3mM.2h.02
Acetate.3mM.2h.03
Acetate.3mM.2h.04
Acetate.3mM.2h.05
Acetate.3mM.2h.06
Acetate.3mM.30m.01
Acetate.3mM.30m.02
Acetate.3mM.30m.03
Acetate.3mM.30m.04
Acetate.3mM.30m.05
Acetate.3mM.30m.06
Acetate.3mM.30m.08
Acetate.3mM.60m.01
Acetate.3mM.60m.03
Acetate.3mM.60m.04
Starvation_1254_12h_03
Starvation_1254_24h_02
Starvation_1254_24h_03
Starvation_1254_24h_06
Starvation_1254_24h_07
Starvation_1254_24h_08
Starvation_1254_3d_01
Starvation_1254_3d_04
Starvation_1254_5d_01
Starvation_1254_5d_03
Starvation_1254_6h_02
Starvation_1254_6h_03
Starvation_1254_6h_04
Starvation_1254_6h_06
Starvation_1254_6h_07
Starvation_1254_OA50_12h_02
Starvation_1254_OA50_12h_03
Starvation_1254_OA50_12h_04
Starvation_1254_OA50_24h_02
Starvation_1254_OA50_24h_03
Starvation_1254_OA50_24h_04
Starvation_1254_OA50_3d_01
Starvation_1254_OA50_3d_02
Starvation_1254_OA50_3d_04
Starvation_1254_OA50_6h_01
Starvation_1254_OA50_6h_02
Starvation_1254_OA50_6h_03
Starvation_1254_PA50_24h_03
Starvation_1254_PA50_24h_04
Starvation_1254_PA50_6h_03
Starvation_OA50_24h_01
Starvation_OA50_24h_03
Starvation_OA50_24h_04
Mtb.response.to.pH.5.5..6.replicates.
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG8.D.Day.0.post_N27A11cy.3
SG.ISB.3.0B_N30A01cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG6_B1_N7A11cy.5
SG6_A1_N7A11cy.3
SG2.D1_N02A02c5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.B.Day.2_N37A06cy.5
SG2.A2_N02A03c3
SG2.D2_N02A03c5
SG2.A3_N02A04c3
SG2.B3_N02A12c3
SG2.D3_N02A04c5
SG8.A.Day.5_N37A10cy.3
SG2.A5_N02A05c3
SG2.B5_N02A09c5
SG2.D5_N02A05c5
SG2.D7_N02A06c5
SG2.B7_N02A10c5
SG2.A7_N02A06c3
SG6D.T7_N11A02cy.3
SG7.T7B_N11A09cy.5
SG7.T7C_N11A10cy.5
SG7.T7D_N11A11cy.5
SG8.B.Day.7_N37A09cy.5
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.A4_N32A04cy.3
SG12.A6_N32A05cy.3
SG12.B6_N32A01cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG12.C24_N32A11cy.5
SG12.B24_N32A03cy.5
SG2.D8_N02A07c5
SG6D.T8_N11A03cy.3
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8B_N11A06cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG2.B9_N02A12c5
SG6.C11_N5A12cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12B_N11A10cy.3
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12B_N30A07cy.3
SG.ISB.3.12D_N30A08cy.3
SG6D.T14_N11A04cy.3

Column members cluster 552effb0b744335b89d41980 Species (TODO)

MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2
H37Rv.hypoxia.2hr.rep.1
H37Rv.hypoxia.2hr.rep.2
H37Rv.hypoxia.2hr.rep.4
NRP.Day6..3
NRP.Day10..1
NRP.Day10..3
NRP.Day12..1
NRP.Day12..2
NRP.Day12..3
NRP.Day14..7
NRP.Day14..9
NRP.Day20..2
pH4.8vspH6.8..6h.
pH4.8vspH6.8..11h.
pH5.2vspH6.8..2h.
pH5.2vspH6.8..5.5h.
pH5.2vspH6.8..11h.
pH5.6vspH6.8..4h.
pH5.6vspH6.8..4h.B
pH5.6vspH6.8..11h.
H37Rv.hypoxia.4hr.rep.7
H37Rv.hypoxia.8hr.rep.3
H37Rv.hypoxia.12hr.rep.2
H37Rv.hypoxia.12hr.rep.3
H37Rv.hypoxia.1.day.rep.3
H37Rv.hypoxia.1.day.rep.4
H37Rv.hypoxia.1.day.rep.5
H37Rv.hypoxia.1.day.rep.7
H37Rv.hypoxia.1.day.rep.10
H37Rv.hypoxia.4.day.rep.1
H37Rv.hypoxia.4.day.rep.3
H37Rv.hypoxia.7.day.rep.2
H37Rv.hypoxia.7.day.rep.3
H37Rv.hypoxia.7.day.rep.4
H37Rv.hypoxia.7.day.rep.5
H37Rv.hypoxia.7.day.rep.6
H37Rv.hypoxia.7.day.rep.7
aceatate.induction.1
aceatate.induction.2
aceatate.induction.3
Acetate.3mM.10m.06
Acetate.3mM.2h.01
Acetate.3mM.2h.02
Acetate.3mM.2h.03
Acetate.3mM.2h.04
Acetate.3mM.2h.05
Acetate.3mM.2h.06
Acetate.3mM.30m.01
Acetate.3mM.30m.02
Acetate.3mM.30m.03
Acetate.3mM.30m.04
Acetate.3mM.30m.05
Acetate.3mM.30m.06
Acetate.3mM.30m.08
Acetate.3mM.60m.01
Acetate.3mM.60m.03
Acetate.3mM.60m.04
Starvation_1254_12h_03
Starvation_1254_24h_02
Starvation_1254_24h_03
Starvation_1254_24h_06
Starvation_1254_24h_07
Starvation_1254_24h_08
Starvation_1254_3d_01
Starvation_1254_3d_04
Starvation_1254_5d_01
Starvation_1254_5d_03
Starvation_1254_6h_02
Starvation_1254_6h_03
Starvation_1254_6h_04
Starvation_1254_6h_06
Starvation_1254_6h_07
Starvation_1254_OA50_12h_02
Starvation_1254_OA50_12h_03
Starvation_1254_OA50_12h_04
Starvation_1254_OA50_24h_02
Starvation_1254_OA50_24h_03
Starvation_1254_OA50_24h_04
Starvation_1254_OA50_3d_01
Starvation_1254_OA50_3d_02
Starvation_1254_OA50_3d_04
Starvation_1254_OA50_6h_01
Starvation_1254_OA50_6h_02
Starvation_1254_OA50_6h_03
Starvation_1254_PA50_24h_03
Starvation_1254_PA50_24h_04
Starvation_1254_PA50_6h_03
Starvation_OA50_24h_01
Starvation_OA50_24h_03
Starvation_OA50_24h_04
Mtb.response.to.pH.5.5..6.replicates.
SG2.B0_N02A09c3
SG2.D0_N02A01c5
SG6.H0_N5A03cy.5
SG6_A0_N7A10cy.3
SG6_B0_N7A10cy.5
SG7.AT0_N11A01cy.5
SG8.A.Day.0.pre_fix_N37A04cy.5
SG8.B.Day.0.pre_N37A12cy.3
SG8.C.Day.0.post_N27A08cy.3
SG8.D.Day.0.pre_N27A10cy.3
SG8.D.Day.0.post_N27A11cy.3
SG.ISB.3.0B_N30A01cy.5
SG7.DT1_N11A08cy.5
SG7.CT1_N11A07cy.5
SG7.BT1_N11A06cy.5
SG6_B1_N7A11cy.5
SG6_A1_N7A11cy.3
SG2.D1_N02A02c5
SG2.B1_N02A10c3
SG2.A1_N02A02c3
SG8.B.Day.2_N37A06cy.5
SG2.A2_N02A03c3
SG2.D2_N02A03c5
SG2.A3_N02A04c3
SG2.B3_N02A12c3
SG2.D3_N02A04c5
SG8.A.Day.5_N37A10cy.3
SG2.A5_N02A05c3
SG2.B5_N02A09c5
SG2.D5_N02A05c5
SG2.D7_N02A06c5
SG2.B7_N02A10c5
SG2.A7_N02A06c3
SG6D.T7_N11A02cy.3
SG7.T7B_N11A09cy.5
SG7.T7C_N11A10cy.5
SG7.T7D_N11A11cy.5
SG8.B.Day.7_N37A09cy.5
SG.ISB.3.7B_N30A03cy.3
SG.ISB.3.7C_N30A03cy.5
SG12.C1_N32A06cy.5
SG12.A2_N32A03cy.3
SG12.A4_N32A04cy.3
SG12.A6_N32A05cy.3
SG12.B6_N32A01cy.5
SG12.A8_N32A06cy.3
SG12.B8_N32A02cy.5
SG12.C8_N32A10cy.5
SG12.C24_N32A11cy.5
SG12.B24_N32A03cy.5
SG2.D8_N02A07c5
SG6D.T8_N11A03cy.3
SG6.B8_N5A07cy.5
SG6.A8_N5A06cy.5
SG7.T8C_N11A07cy.3
SG7.T8B_N11A06cy.3
SG.ISB.3.8A_N30A04cy.5
SG.ISB.3.8B_N30A05cy.3
SG.ISB.3.8C_N30A05cy.5
SG2.B9_N02A12c5
SG6.C11_N5A12cy.5
SG6.B11_N5A11cy.5
SG6.A11_N5A10cy.5
SG7.T12D_N11A12cy.3
SG7.T12B_N11A10cy.3
SG12.B120_N32A04cy.5
SG12.A120_N32A08cy.3
SG.ISB.3.12B_N30A07cy.3
SG.ISB.3.12D_N30A08cy.3
SG6D.T14_N11A04cy.3