Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0103c
• Rv0531
• Rv1104
• Rv1258c
• Rv1359
• Rv1706c
• Rv1711
• Rv1758
• Rv1896c
• Rv2062c
• Rv2116
• Rv2118c
• Rv2236c
• Rv2263
• Rv2548
• Rv2631
• Rv2667
• Rv2806
• Rv3070
• Rv3072c
• Rv3239c
• Rv3439c
• Rv3522
• Rv3604c
• Rv3772
• Rv3906c

Bicluster Conditions

• Strain.CDC1551..replicate.1
• Strain.CDC1551..replicate.2
• Strain.CDC1551..replicate.3
• Strain.CDC1551..replicate.4
• Strain.1006...replicate.1
• Strain.1006...replicate.2
• Strain.1006...replicate.3
• Strain.1006...replicate.4
• Strain.1843..replicate.1
• Strain.1843...replicate.3
• Strain.3160..replicate.4
• Strain.9700665..replicate.1
• Strain.9700665..replicate.2
• Strain.9700665..replicate.4
• Strain.9800608..replicate.1
• Strain.9800608...replicate.3
• Strain.9802501..replicate1
• Strain.9802826..replicate.4
• Strain.M3061a..replicate.2
• Strain.M3061a..replicate.3
• H37Rv.0.05..SDS.exposure.for.1h.rep.1
• H37Rv.0.05..SDS.exposure.for.1h.rep.2
• H37Rv.0.05..SDS.exposure.for.1h.rep.3
• H37Rv.0.05..SDS.exposure.for.1h.rep.4
• H37Rv.0.05..SDS.exposure.for.1h.rep.5
• H37Rv.0.05..SDS.exposure.for.1h.rep.6
• H37Rv.vs..H37Rv.SDS.treated.rep.1
• H37Rv.vs..H37Rv.SDS.treated.rep.2
• H37Rv.vs..H37Rv.SDS.treated.rep.3
• H37Rv.vs..H37Rv.SDS.treated.rep.4
• H37Rv.vs..H37Rv.SDS.treated.rep.5
• H37Rv.vs..H37Rv.SDS.treated.rep.6
• X4mM.H2O2.ctrl..2h...1
• X4mM.H2O2.ctrl..2h...2
• X4mM.H2O2.ctrl..4h...1
• X4mM.H2O2.ctrl..4h...2
• X4mM.H2O2vsctrl..4h.
• X4mM.H2O2vsctrl..4h.A
• H2O2.4mM.vs.ctrl.12h.1
• PBS.Tw.DMSOvs7H9..6h
• X60J.UV.ctrl..2h.
• X60J.UVvsctrl..6h.
• H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3
• H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1
• Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2
• Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3
• Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3
• H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
• Whole.Lung.Surfactant.2hrs.rep.1
• Whole.Lung.Surfactant.2hrs.rep.3
• Whole.Lung.Surfactant.30min.rep.1
• Whole.Lung.Surfactant.30min.rep.2
• Whole.Lung.Surfactant.30min.rep.4
• Whole.Lung.Surfactant.30min.rep.5
• Extracted.Lung.Surfactant.2hrs.rep.1
• Extracted.Lung.Surfactant.2hrs.rep.2
• Extracted.Lung.Surfactant.30min.rep.1
• Extracted.Lung.Surfactant.30min.rep.4
• Purified.Surfactant.Lipids.2hrs.rep.2
• Purified.Surfactant.Lipids.30min.rep.1
• Purified.Surfactant.Lipids.30min.rep.2
• Purified.Human.SP.A.Coated.2hrs.rep2
• Purified.Human.SP.A.Uncoated.2hrs.rep4
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
• aceatate.induction.2
• Acetate.3mM.10m.02
• Acetate.3mM.10m.07
• Acetate.3mM.10m_04
• Acetate.3mM.2h.01
• Acetate.3mM.2h.03
• Acetate.3mM.2h.04
• Acetate.3mM.30m.04
• Acetate.3mM.60m.02
• Acetate.3mM.60m.04
• MTB1254_SDS_90MIN_01
• MTB1254_SDS_90MIN_02
• MTB1254_SDS_90MIN_03
• MTB1254_SDS_90MIN_04
• SDS_60min_01
• CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2
• CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3
• CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1
• CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3
• BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4
• BCG.2hr.phagosomal.profile
• M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
• M..tuberculosis.CDC1551.24hr.phagosome.expression.profile
• MTB.in.Wild.type.macrophages.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.4hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.48hrs
• MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.3
• MTB.strain.1254.Ctrl.vs.0.05.mM.H202.40min.rep.4
• MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.4
• MTB.strain.1254.Ctrl.vs.10.0.mM.H202.40min.rep.6
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.1
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.3
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.4
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.5
• MTB.strain.1254.Ctrl.vs.200.mM.H202.40min.rep.6
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.1
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.3
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.5
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.40min.rep.6
• MTB.strain.1254.Ctrl.vs.5.0.mM.H202.4hr.rep.3
• MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.4
• MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.5
• MTB.strain1254.vs.MTB.strain.1254.for.H2O2.exp.control.rep.6
• Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
• Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
• Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
• Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
• Russell_Lab_Spotted_Oligos_1.9..14.day.resting.macrophage.infection.Day.8..rep.1..Russell_Lab_Spotted_Oligos_1.9..
• Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
• Russell_Lab_Spotted_Oligos_1.14.14.day.resting.macrophage.infection.Day.12..rep.2..Russell_Lab_Spotted_Oligos_1.14.
• hip.mutant.KL2801..biological.rep1
• hip.mutant.KL2825..biological.rep2
• hip.mutant.KL2849..biological.rep1
• hip.mutant.HTS1090..biological.rep2
• hip.mutant.HTS1105..biological.rep1
• hip.mutant.HT1116..biological.rep1
• hip.mutant.HT1116..biological.rep2
• hip.mutant.HT1117..biological.rep1
• hip.mutant.HT1117..biological.rep2
• hip.mutant.HT1120..biological.rep1
• hip.mutant.HT1120..biological.rep2
• hip.mutant.HT1130..biological.rep1
• hip.mutant.HT1130..biological.rep2
• hip.mutant.HT1137..biological.rep1
• hip.mutant.HT1137..biological.rep2
• hip.mutant.HT1170..biological.rep2