Bicluster

Bicluster Motifs

Bicluster Genes

• Rv0322
• Rv0773c
• Rv1191
• Rv1283c
• Rv1441c
• Rv1538c
• Rv1541c
• Rv1666c
• Rv2026c
• Rv2075c
• Rv2236c
• Rv2361c
• Rv2387
• Rv2403c
• Rv2599
• Rv2671
• Rv2739c
• Rv2796c
• Rv2857c
• Rv3194c
• Rv3227
• Rv3509c
• Rv3635

Bicluster Conditions

• H37Rv.0.05..SDS.exposure.for.1h.rep.1
• H37Rv.0.05..SDS.exposure.for.1h.rep.2
• H37Rv.0.05..SDS.exposure.for.1h.rep.4
• H37Rv.0.05..SDS.exposure.for.1h.rep.5
• H37Rv.0.05..SDS.exposure.for.1h.rep.6
• MTB.strain.1254.Ctrl.vs.high.aeration.rep2
• MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.2
• MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3
• MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6
• H37Rv.vs..H37Rv.SDS.treated.rep.1
• H37Rv.vs..H37Rv.SDS.treated.rep.2
• H37Rv.vs..H37Rv.SDS.treated.rep.4
• H37Rv.vs..H37Rv.SDS.treated.rep.5
• H37Rv.vs..H37Rv.SDS.treated.rep.6
• H37Rv.0.2..Oxygen..2h..1
• H37Rv.0.2..Oxygen..2h..4
• H37Rv.0.2..Oxygen..2h..5
• H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.1
• H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3
• H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4
• H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.5
• pH4.8vspH6.8..2h.A
• pH4.8vspH6.8..2h.B
• pH4.8vspH6.8..4h.A
• pH4.8vspH6.8..5h.
• pH5.2vspH6.8..5h.
• pH5.2vspH6.8..10.5h.
• pH5.2vspH6.8..16h.
• pH5.6vspH6.8..2h.A
• pH5.6vspH6.8..7h.
• X0.1ug.mL.Mtmvsctrl..0.33h..x
• X0.2ug.mL.Mtm.ctrl..4h...1.x
• X0.2ug.mL.Mtm.ctrl..4h...2.x
• PBS.Tween.7H9
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4
• H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6
• Whole.Lung.Surfactant.2hrs.rep.2
• Whole.Lung.Surfactant.2hrs.rep.3
• Whole.Lung.Surfactant.30min.rep.2
• Whole.Lung.Surfactant.30min.rep.4
• Whole.Lung.Surfactant.30min.rep.5
• Extracted.Lung.Surfactant.30min.rep.1
• Extracted.Lung.Surfactant.30min.rep.2
• Purified.Surfactant.Lipids.30min.rep.1
• Purified.Human.SP.A.Coated.2hrs.rep1
• Purified.Human.SP.A.Coated.2hrs.rep2
• Purified.Human.SP.A.Uncoated.2hrs.rep1
• Purified.Human.SP.A.Uncoated.2hrs.rep3
• X20ug.ml.KCN.vs.DMSO.6hrs.x
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
• H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5
• Glycerol_1.
• Glycerol_1._10M_01
• Glycerol_1._30M_01
• MTB1254_SDS_90MIN_01
• MTB1254_SDS_90MIN_02
• MTB1254_SDS_90MIN_03
• MTB1254_SDS_90MIN_04
• SDS_60min_01
• Starvation_1254_12h_03
• Starvation_1254_24h_03
• Starvation_1254_24h_07
• Starvation_1254_24h_08
• Starvation_1254_3d_01
• Starvation_1254_3d_03
• Starvation_1254_5d_02
• Starvation_1254_6h_02
• Starvation_1254_6h_04
• Starvation_1254_6h_07
• H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.1
• H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1
• Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1
• H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1
• CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2
• H37Rv.reaeration.for.1hrs.rep.1
• H37Rv.reaeration.for.1hrs.rep.2
• H37Rv.reaeration.for.1hrs.rep.3
• H37Rv.reaeration.for.1hrs.rep.8
• H37Rv.reaeration.for.4hrs.rep.1
• H37Rv.reaeration.for.4hrs.rep.2
• H37Rv.reaeration.for.4hrs.rep.4
• H37Rv.reaeration.for.4hrs.rep.6
• H37Rv.reaeration.for.4hrs.rep.8
• H37Rv.reaeration.for.6hrs.rep.4
• H37Rv.reaeration.for.6hrs.rep.5
• H37Rv.reaeration.for.12hrs.rep.2
• H37Rv.reaeration.for.12hrs.rep.5
• H37Rv.reaeration.for.12hrs.rep.6
• H37Rv.reaeration.for.24hrs.rep.1
• H37Rv.reaeration.for.24hrs.rep.4
• H37Rv.reaeration.for.24hrs.rep.5
• Mtb.response.to.pH.6.5..6.replicates.
• M..tuberculosis.CDC1551.2hr.phagosome.expression.profile
• MTB.in.Wild.type.macrophages.for.4hrs
• MTB.in.Wild.type.macrophages.for.24hrs
• MTB.in.Wild.type.macrophages.for.48hrs
• MTB.in.Wild.type.macrophages...IFNg.for.24hrs
• MTB.in.Wild.type.macrophages...IFNg.for.48hrs
• Russell_Lab_Spotted_Oligos_1.1..14.day.resting.macrophage.infection.2hr..rep.1..Russell_Lab_Spotted_Oligos_1.1..
• Russell_Lab_Spotted_Oligos_1.3..14.day.resting.macrophage.infection.Day.2..rep.1..Russell_Lab_Spotted_Oligos_1.3..
• Russell_Lab_Spotted_Oligos_1.4..14.day.resting.macrophage.infection.Day.2..rep.2..Russell_Lab_Spotted_Oligos_1.4..
• Russell_Lab_Spotted_Oligos_1.5..14.day.resting.macrophage.infection.Day.4..rep.1..Russell_Lab_Spotted_Oligos_1.5..
• Russell_Lab_Spotted_Oligos_1.8..14.day.resting.macrophage.infection.Day.6..rep.2..Russell_Lab_Spotted_Oligos_1.8..
• Russell_Lab_Spotted_Oligos_1.11.14.day.resting.macrophage.infection.Day.10..rep.1..Russell_Lab_Spotted_Oligos_1.11.
• Russell_Lab_Spotted_Oligos_1.13.14.day.resting.macrophage.infection.Day.12..rep.1..Russell_Lab_Spotted_Oligos_1.13.
• MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2
• X10ug.mL..59.DMSO..6h
• X10ug.mL..109.DMSO..6h
• X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050.
• X10ug.mL..241.DMSO..6h
• X10ug.mL..241vsDMSO..6h
• X0.2ug.mL..111891.DMSO..5.5h..1
• X0.2ug.mL..111891.DMSO..5.5h..2
• X1.ug.mL..111891vsDMSO..6h
• X2ug.mL..111891vsDMSO..6h
• X0.5ug.mL..111895vsDMSO..6h
• X2ug.mL..111895vsDMSO..6hA
• X2ug.mL..111895vsDMSO..6hB
• X0.5ug.mL..121940vsDMSO.6h
• X0.5ug.mL..121940vsDMSO.6hA
• X0.1mMGSNO.10ug.mLmdvsDMSO.6h
• X0.1mMGSNO.10ug.mLmdvsDMSO.6hA
• X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA
• X25ug.mLCPZ.0.1mMGSNO.DMSO..3
• X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2
• X0.1mMGSNO.5ug.mLKCNvsDMSO.6h
• X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A
• X0.1ug.mL.Mtmvsctrl..0.33h..y
• X0.1ug.mL.Mtmvsctrl..0.75h..y
• X0.1ug.mL.Mtmvsctrl..1.5h..y
• X0.2ug.mL.Mtmvsctrl..0.33h..y
• X0.2ug.mL.Mtmvsctrl..0.75h..y
• X0.2ug.mL.Mtmvsctrl..1.5h..y
• X0.2ug.mL.Mtmvsctrl..2h.A.y
• X0.2ug.mL.Mtmvsctrl..2h.B.y
• X0.2ug.mL.Mtmvsctrl..2h.C.y
• X0.2ug.mL.Mtmvsctrl..4h.A.y
• X0.2ug.mL.Mtmvsctrl..4h.B.y
• X0.2ug.mL.Mtmvsctrl..6h..y
• X0.1mg.mL.TriclosanvsEtOH..6h
• X0.15mg.mL.TricvsEtOH..6h
• X0.15mg.mL.TricvsEtOH..6hA
• X10ug.mL.TriclosanvsDMSO..6hB
• X50ug.mL.Triclosan.EtOH
• X100ug.mL.TriclosanvsEtOH..6h
• X100ug.mL.TriclosanvsEtOH..6hA
• X10ug.mL.EconazolevsEtOH..6h
• X10ug.mL.EconazolevsEtOH..6hA
• X24ug.mL.Econazole.DMSO..6h..2
• EMB.10ug.mL.vs.DMSO.12h.4
• X20ug.mL.ethambutol.DMSO
• X0.2mg.mL.AmpvsEtOH..6hA
• X0.2mg.mL.AmpvsEtOH..6hB
• X10ug.mL.clofazimine.DMSO..6h
• X13ug.mL.clfzine.DMSO..6h..1
• X13ug.mL.clfzine.DMSO..6h..2
• X0.32ug.mL.CervsEtOH..6h
• X0.32ug.mL.CervsEtOH..6hA
• X0.5ug.mL.CervsEtOH..6hA
• X0.5ug.mL.CeruleninvsDMSO..6hA
• X100ug.mL.Ceph.DMSO..6h
• X100ug.mLCephalexinvsEtOH.6h
• X100ug.mLCephalexinvsEtOH.6hA
• X10ug.mLchlorpromazinevsctrl.6h
• X10ug.mLchlorpromazinevsctrl.6hA
• X10ug.mL.ChlorprovsEtOH
• X20ug.mL.chlorprmz.DMSO..6h..1
• X20ug.mL.chlorprmz.DMSO..6h..2
• X20ug.mL.CPZvsDMSO..6h
• X10ug.mL.clotrimvsEtOH..6h
• X24ug.mL.cltrmazole.DMS..6h..2
• X20uM.DCCD.DMSO..6h..1
• X20uM.DCCD.DMSO..6h..2
• X100uM.DCCD.DMSO..6h
• X100uM.DipyridylvsCtrl..6hA
• X200uM.Dipyridylvsctrl..6h
• X200uM.Dipyridylvsctrl..6hA
• X150uM.Deferroxaminevsctrl..6hA
• X150uM.Deferroxaminevsctrl..6hB
• X2mM.DTTvsDMSO..6h
• X2mM.DTTvsDMSO..6h.A
• X12ug.mLEthionamidevsEtOH.6hA
• X0.4ug.mL.INHvsEtOH..6h
• X5ug.mL.KCN.DMSO..6h..1
• X5ug.mL.KCN.DMSO..6h..2
• X20ug.mL.KCN.DMSO..6h
• X10ug.mL.LevovsEtOH..6h
• X10ug.mL.LevovsEtOH..6hA
• X10ug.mL.menadionevsDMSO..6h
• X10ug.mLmnd.Dubos.vsDMSO.6h
• X10ug.mLmdn.0.1mMGSNO.DMSO..2
• X10ug.mL.Nvb.DMSO..6h..3
• X9ug.mLAscidideminNpvsDMSO.6h
• X5ug.mL.OfloxvsEtOH..6h
• X130ug.mL.TLMvsDMSO..6hA
• X0.13mg.mL.TLMvsDMSO..6hA
• X0.2mg.mL.TLMvsEtOH..6hA
• X10ug.mL.TRZ.DMSO..6h..1
• X10ug.mL.TRZ.DMSO..6h..2
• X10uM.ValinomycinvsDMSO..6h
• X20ug.ml.KCN.vs.DMSO.6hrs.y
• X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1
• X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.2
• X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3.x
• X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.x
• X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
• X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1
• X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2
• X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
• X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2
• X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1
• X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2
• X130ug.ml.TLM.vs.DMSO.6hrs.rep.1
• X130ug.ml.TLM.vs.DMSO.6hrs.rep.2
• X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1
• X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2
• X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1
• X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2
• X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3
• X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4
• X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1
• X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2
• MTB1254.3524.1._INH_20MIN
• X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1.y
• CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1
• H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
• H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
• H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
• H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1
• H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2
• H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.3
• H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
• H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
• H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
• H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
• H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.2
• H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1
• H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.1